BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932366
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23680.1 | Symbols: | Cold acclimation protein WCOR413 fami... 778 0.0
> AT2G23680.1 | Symbols: | Cold acclimation protein WCOR413 family
| chr2:10066163-10067455 FORWARD LENGTH=940
Length=940
Score = 778 bits (421), Expect = 0.0
Identities = 552/615 (90%), Gaps = 10/615 (2%)
Strand=Plus/Plus
Query 1 CTTTTATTTTATATTGTAAAAT-GCAAATGATTGAGTTTCTGAATGAGGTCCAAGCCGCT 59
|||||| || |||||| ||||| | |||| ||||||| |||||||||| ||||||||| |
Sbjct 60 CTTTTAGTTCATATTGAAAAATGGAAAAT-ATTGAGTATCTGAATGAGATCCAAGCCGTT 118
Query 60 GCAGGGAAGCTAATCCACAGCTATGGAGTCCCAGTTATGGTCATGTTGTTCCTAAGATGG 119
|| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 119 GCGGGGAAGCTAATCCACAGCTATGGAGTCCCAGTTATGATCACGTTGTTCCTAAGATGG 178
Query 120 GTCACGTCCTTCGTTGCAGTTTTTCTGATGATATTGGATCGAACGAAATGGAAGTACTCA 179
|| ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 179 CTCGCGTCCATCGTTGCAGTTTTTCTTATGATATTGGATCAAACGAAATGGAAGTACTCA 238
Query 180 AACAACATAATGACTTCACTATTAGCTCCTTACCTCTTCTCTAGCCTTCCTATTGTTATT 239
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AACAATATAATGGCTTCACTATTAGCTCCTTACCTCTTCTCTAGCCTTCCTATTGTTATT 298
Query 240 TTCCAGTTCTTGAGGACCGGGTTTGGGAAATGGATCGCTCTGCTCACAGTTGTTCTCAGG 299
|| ||| ||||||||| |||| ||||||||||||||||||| ||||| ||| ||||||||
Sbjct 299 TTTCAGGTCTTGAGGAACGGGGTTGGGAAATGGATCGCTCTCCTCACCGTTATTCTCAGG 358
Query 300 CtttttttACCAAACCATTTTCCTGAATCGCTAGATATCCCAAGTGCAACGATTCTTCTT 359
|||||||||||||||||||||| |||||||||||| ||||| |||| || |||||||||
Sbjct 359 CTTTTTTTACCAAACCATTTTCATGAATCGCTAGAGATCCCGGGTGCTACAATTCTTCTT 418
Query 360 ATTGTGGCTACACCAAATGA-ACTAGTGG-AAGCATTCAGAGACGACCTGAGATATACCG 417
||||||| |||||| | ||| | ||| || || |||||||||||||||||||||||| |
Sbjct 419 ATTGTGGTTACACCGAGTGACA-TAGGGGCAAT-ATTCAGAGACGACCTGAGATATACGG 476
Query 418 GAGGT-AGTGTGTGCCTTTTCACGAGCTTTTACCTTCTCGATAAACACACTAAAGCTTGT 476
||||| | |||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 477 GAGGTGA-TGTGTGCCTTCTCACGAGCTTTTACCTTATCAATAAACACACTAAAGCTTGT 535
Query 477 GGTGGTTTCAAAAAGTCATTCACTGAAAAGGACAAAATCACTTACACCATTTGTCTTTTT 536
|||||| ||||||| ||||||||| ||||||||||| ||||||||| ||||||| || |
Sbjct 536 GGTGGTATCAAAAACTCATTCACTCAAAAGGACAAAGTCACTTACAGCATTTGT-TTGTG 594
Query 537 -ATTCTCTCTGTCTACCCTATTTTGTCCGCATTTGATTTCCTCTTCTACTTATAAGAACC 595
||||| | ||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct 595 GATTCTGTTTGTCTACCCTATTTTGTCCTCATTTGCTGCCCTCTTCTACTTATAAGAACG 654
Query 596 CAACGATCTTGCTGA 610
|||||||||||||||
Sbjct 655 CAACGATCTTGCTGA 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5