BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932378
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23800.1 | Symbols: GGPS2, GGPS5 | geranylgeranyl pyrophosph... 1788 0.0
AT2G18640.1 | Symbols: GGPS4 | geranylgeranyl pyrophosphate syn... 553 2e-156
AT2G18620.1 | Symbols: | Terpenoid synthases superfamily prote... 285 6e-76
> AT2G23800.1 | Symbols: GGPS2, GGPS5 | geranylgeranyl pyrophosphate
synthase 2 | chr2:10131489-10132779 REVERSE LENGTH=1291
Length=1291
Score = 1788 bits (968), Expect = 0.0
Identities = 1112/1179 (94%), Gaps = 19/1179 (2%)
Strand=Plus/Plus
Query 1 TTTTGATTTGA-TTAGATGAAACATGGAACCACAAActctttttctctatctctcacttc 59
||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 8 TTTTGATTTGATTTTGATGAAAAATGGAACCACAAATTCTTTTTCTCTATCTCTCAC-TC 66
Query 60 -tcattctctccctaaacttcttcttcacgaatcttAAACCGAGGCTAGTCCGCCTCTTC 118
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 67 TTCATTCTCTCCCTAAACTTCTTCTTCACGAATCTTAAACCAAGGCTAGTCCGCCTCTTC 126
Query 119 CAGCCTTCTTTGGAATCTCGTGTCAAGACCGCCCTATTATCCCGAAAAGAAGTAGCCGAG 178
||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||| |
Sbjct 127 CAGCCTTCTTTAGAATCTCGTGTCAAGACCGCTCTTTTATCCCGAAAGGAAGTAGCCGCG 186
Query 179 TTTCTTGATTCTCCCATTGTagaagacgaa-aaagcg--g--a-ag-a-a-gaagaagaa 229
|||||||||||||||||||| ||||||||| || ||| | | || | | |||||||||
Sbjct 187 TTTCTTGATTCTCCCATTGTCGAAGACGAAGAAGGCGAAGAAAGAGAAGAGGAAGAAGAA 246
Query 230 -ga--TATCGTTTCAAATGCCAACTTCACGTTTGAATTTGATCCATACATGATAAGCAAA 286
|| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 247 GGAGGTATCGTTTCAAATGCCAACTTTACGTTTGAGTTTGATCCATACATGATGAGCAAA 306
Query 287 GCCGAATCAGTGAACAAAGCTCTAGACGAAGCCATTCCAGTCGGAGAGCCACTCAAGATC 346
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 307 GCCGAATCAGTGAACAAAGCTCTAGAAGAAGCAATTCCAGTCGGAGAGCCACTCAAGATT 366
Query 347 CACGAAGCCATGCGTTACGCGATTCTTGCGGCTGGAAAACGTGTTAGGCCAATACTCTGT 406
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CATGAAGCCATGCGATACGCGATTCTTGCGGCTGGAAAACGTGTTAGGCCAATACTCTGC 426
Query 407 CTTGCTTCTTGCGAGCTAGTAGGCGGTCAAGAAAACGCCGCAATGCCTGCGGCTTGTGCG 466
||||||||||||||||||||||| || |||||||| || |||||||| || |||||||||
Sbjct 427 CTTGCTTCTTGCGAGCTAGTAGGTGGCCAAGAAAATGCGGCAATGCCCGCCGCTTGTGCG 486
Query 467 GTTGAGATGATCCACACGATGTCTCTAATCAAAGACGATTTGCCTTGTATGGACAACGAT 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GTTGAGATGATCCACACGATGTCTCTAATCAAAGACGATTTGCCTTGTATGGACAACGAC 546
Query 527 GATTTGCGTCGTGGAAAGCCCACGACGCATAAAGTCTACGGTGAGGGAGTTGCCATTCTC 586
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 547 GATTTGCGTCGTGGAAAGCCCACGACGCACAAAGTCTACGGCGAAGGAGTTGCCATTCTC 606
Query 587 TCTGGTGGGGCTCTCTTGTCTCTTGCCTTCGAGCACATGACGACGGCTGAGATATCTTCG 646
||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||| |||
Sbjct 607 TCTGGTGGGGCTCTCTTGTCTCTTGCCTTTGAGCACATGACCACCGCTGAAATATCCTCG 666
Query 647 GAGAGAATGGTTTGGGCAGTGAGAGAATTGGCTAGGTCTATTGGTACAAGAGGTTTAGTC 706
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 667 GAGAGAATGGTTTGGGCGGTGAGAGAATTGGCTAGGTCTATTGGGACAAGAGGTTTAGTC 726
Query 707 GCGGGACAAGCGATGGATATAAGCAGTGAAGGTTTGGACTTAAACGAAGTCGGATTAGAG 766
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 727 GCGGGACAAGCGATGGATATAAGCAGTGAAGGTTTGGACTTAAACGAGGTCGGATTAGAG 786
Query 767 CATTTGGAGTTTATCCATGTCCATAAAACCGCGGTTTTGTTGGAAACTGCCGCGGTTCTT 826
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 787 CATTTGGAGTTTATCCATGTTCATAAAACCGCGGTTTTGTTGGAAACTGCCGCGGTTCTT 846
Query 827 GGAGCCATTATTGGTGGTGGATCTGATGAAGAGATTGAAAGTGTGAGAAAGTTTGCAAGG 886
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GGCGCCATAATTGGTGGTGGATCTGATGAAGAGATTGAAAGTGTGAGAAAGTTTGCAAGG 906
Query 887 TGCATTGGATTGTTGTTTCAGGTGGTGGATGATATTTTGGACGAGACAAAGTCATCGGAG 946
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 907 TGCATTGGATTGTTGTTTCAGGTGGTGGATGATATTTTGGACGAGACGAAGTCGTCGGAG 966
Query 947 GAATTGGGAAAAACCGCCGGAAAAGATCAGCTCACCGGAAAGCTAACGTATCCGAAGTTG 1006
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct 967 GAATTGGGAAAAACCGCCGGGAAAGATCAGCTCGCCGGAAAGCTAACGTATCCAAAGTTG 1026
Query 1007 ATGGGGTTGGAGAAATCGAAAGAATTTGTTAAGAGATTGACGAAAGATGCACGGCAACAT 1066
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 ATAGGGTTGGAGAAATCGAAAGAATTTGTTAAGAGATTGACGAAAGATGCACGGCAACAT 1086
Query 1067 CTTCAAGGGTTTAGTTCTGAAAAGGTTGCTCCTTTAGTAGCTCTTACTACTTTTATTGCT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CTTCAAGGGTTTAGTTCTGAAAAGGTTGCTCCTTTAGTAGCTCTTACTACTTTTATTGCT 1146
Query 1127 AATAGAAATAAGTGATTAT-T-T--GTTTTATTTGTGTG 1161
||||||||||||||||||| | | ||||| ||||||||
Sbjct 1147 AATAGAAATAAGTGATTATATATTTGTTTTGTTTGTGTG 1185
> AT2G18640.1 | Symbols: GGPS4 | geranylgeranyl pyrophosphate synthase
4 | chr2:8083740-8084888 REVERSE LENGTH=1149
Length=1149
Score = 553 bits (299), Expect = 2e-156
Identities = 704/892 (79%), Gaps = 58/892 (7%)
Strand=Plus/Plus
Query 272 TACATGATAAGCAAAGCCGA-ATCAGTGAACAAAGC-TCTAGACGAAGCCATTCCAGTCG 329
|||||||| |||||||| || | || | |||| ||| | |||| ||||| |||||| |
Sbjct 266 TACATGATCAGCAAAGCAGAGA-CAATAAACAGAGCAT-TAGATGAAGCAATTCCACTTA 323
Query 330 GAGAGCCACTCAAGATCCACGAA-GCCATGCGTTACGCGATTCTTGC-GGCTGGAAAACG 387
||||||||||| |||||| || || ||||||||||||||||| || ||| ||||||||
Sbjct 324 TTGAGCCACTCAACATCCAC-AAGGCAATGCGTTACGCGATTCTCGCAGGC-GGAAAACG 381
Query 388 TGTTAGGCCAATACTCTGTCTTGCTTCTTGCGAGCTAGTAGGCGGTCAAGAAAACG--CC 445
||| |||||||||||||| || || ||||||||||||| ||||| ||| | ||
Sbjct 382 TGTCAGGCCAATACTCTGCCTAGCCGCTTGCGAGCTAGTCGGCGGGGAAG--AGCGTTTA 439
Query 446 GCAATGCCTGCGGCTTGTGCGGTTGAGATGATCCACACGATGTCTCTAATCAAAGACGAT 505
|| || | ||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||
Sbjct 440 GCGATTCAAGCGGCTTGTGCAGTTGAAATGATTCACACAATGTCACTCATCAAAGACGAT 499
Query 506 -TTGCCTTGTATGGACAACGATGATTTGCGTCG-TGGAAAGCCCACGACGCATAAAGTCT 563
|| ||||||||||||||||| ||| | || || ||||| || || || ||||||||||
Sbjct 500 CTT-CCTTGTATGGACAACGACGATCTCCGACGAGGGAAA-CCAACAACACATAAAGTCT 557
Query 564 ACGGTGAGGGAGTTGCCATTCTCTCTGGTGGGGCTCTCTT-GTCTCTTGCCTTCGAGCAC 622
||| || | || ||||| ||||| || || || || || | |||| || ||||||||
Sbjct 558 TCGGAGAAAGCGTAGCCATACTCTCCGGCGGCGCACTTTTAG-CTCTAGCTTTCGAGCAT 616
Query 623 ATGAC-GACGGCTGA-GATATCTTCGGAGAGAATGGTTTGGGCAGTGAGAGAATTGGCTA 680
|||| || ||||| | | || || ||| ||||||| | || || | |||||||||||
Sbjct 617 TTGACGGA-AGCTGACG-TGTCATCCAAGAAAATGGTTCGAGCCGTTAAAGAATTGGCTA 674
Query 681 GGTCTATTGGTAC-AAGAGGTTTAGTCGCGGGACAAGCGATGGATATAAGCAGTGAAGGT 739
||||||||| || || ||| | || |||||||| |||| |||| |||||||||||||
Sbjct 675 AGTCTATTGGAACGAA-AGGACTCGTAGCGGGACAGGCGAAGGATTTAAGCAGTGAAGGG 733
Query 740 TTGG-ACTTAAACGAAGTCGGATTAGAGCAT-TTGGAGTTTATCCATGTCCATAAAACCG 797
|||| || |||||| |||||||||||| || || || | ||| || || ||||||| |
Sbjct 734 TTGGAAC-AAAACGATGTCGGATTAGAGGATCTT-GAATATATTCACGTTCATAAAA-C- 789
Query 798 CGGTT--TTG-TTGGAAAC-TGCCGCGGTTCTTGGAGCCATTATTGGTGGTGGATCTGAT 853
||||| ||| || ||| | | | |||||| | ||||| |||| || |||||| | ||
Sbjct 790 CGGTTCGTTGCTT-GAAGCAT-CTGCGGTTATCGGAGCGGTTATAGGCGGTGGAACAGA- 846
Query 854 G-AAGAGATTGA-AAGTGTGAGAAAGTTTGCAAGGTGCATTGGATTGTTGTTTCAGGTGG 911
| ||||||| || || |||||||| ||||| ||||| || |||||||||||||||||||
Sbjct 847 GAAAGAGATAGAGAA-AGTGAGAAACTTTGCGAGGTGTATCGGATTGTTGTTTCAGGTGG 905
Query 912 TGGATGATATTTTGGACGAGACAAAGTCATCGGAGGAATTGGGAAAAACCGCCGGAAAAG 971
| |||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 906 TTGATGATATCTTGGATGAGACCAAGTCGTCGGAGGAATTGGGAAAAACCGCCGGAAAAG 965
Query 972 ATCAGCTCACCGGAAAGCTAACGTATCCGAA-GTTGATGGG-GTTGGAGAAATCGAAAGA 1029
|| || || |||||||||| |||||||| || || ||| || |||| ||||||| || ||
Sbjct 966 ATAAGGTCGCCGGAAAGCTGACGTATCCAAAAGT-GATTGGTGTTG-AGAAATCTAAGGA 1023
Query 1030 ATTTGTTAAGA-GATTGACGAAAGATGC-ACG-GCAACATCTTCAAGGGTTT-AGTTCTG 1085
||||| ||| | |||| || |||||| | | | ||||||||||||||||| | |||||
Sbjct 1024 GTTTGTGGAGAAG-TTGAAGAGAGATGCGA-GAG-AACATCTTCAAGGGTTTGA-TTCTG 1079
Query 1086 A-AAAGGTTGCTCCTTT-AGTAGCTCTTACTA-CTTTTATTGCTAATAGAAA 1134
| |||| | ||||| | |||||||||||| ||| ||||| || |||||
Sbjct 1080 ACAAAG-TCAAACCTTTGA-TAGCTCTTACTAACTTC-ATTGCCAACAGAAA 1128
> AT2G18620.1 | Symbols: | Terpenoid synthases superfamily protein
| chr2:8078288-8079360 FORWARD LENGTH=1073
Length=1073
Score = 285 bits (154), Expect = 6e-76
Identities = 547/731 (75%), Gaps = 49/731 (7%)
Strand=Plus/Plus
Query 330 GAGAGCCACTCAAGATCCACGAAGCCATGCGTTACGCGATTCTTG-CGGCTGGAAAACGT 388
|||| ||| |||||||||| ||||| || |||||| || |||| | | | || |||||
Sbjct 259 GAGAACCAATCAAGATCCATGAAGCGATACGTTACTCGCTTCTCGCCAG-AGGCAAACGA 317
Query 389 GTTAGGCCAATACTCTGTCTTGCTTCTTGCGAGCTAGTAGGCGGTC-AAGAAAACGCCGC 447
|| || || | |||||| | || | || ||| |||| ||||| | ||||| || ||
Sbjct 318 GTGAGACCCGTGCTCTGTATCGCAGCGTGTGAGTTAGTGGGCGG-CGAAGAATCCGTGGC 376
Query 448 AATGCCTGCGGCTTGTGCGGTTGAGATGATCCACACGATGTC-TCTAATCAAAGACGAT- 505
| || ||||| || || || || ||||||||||| ||||| | | ||| | ||||||
Sbjct 377 GTTACCGGCGGCGTGCGCCGTGGAAATGATCCACACAATGTCGT-TGATCCACGACGATC 435
Query 506 TTGCCTTGTATGGACAACGATGATTTGCGTCGTGGAAAGCCCACG-ACGCATAAAGTCTA 564
|| || |||||||| ||||| ||| | || || ||||| || ||| || || ||||| |
Sbjct 436 TT-CCATGTATGGATAACGACGATCTCCGCCGCGGAAAACCAACGAAC-CACAAAGTTTT 493
Query 565 CGGTGAGGGA-GTTGCCATTCTCTCTGGTGG-GGCTCTCTTGTCTC-TT-GCCTTCGAGC 620
|||||| || || || || | | | || | | | ||| | || || || || ||||
Sbjct 494 CGGTGA-AGACGTCGCGGTT-T-T-AGCCGGAGACGCGCTTATATCGTTCGCGTTTGAGC 549
Query 621 ACAT-G--ACG---ACGGCTGAGATATCTTCGGAGAGAATGGTTTGGGCAGT-GAGAGAA 673
|| | | ||| |||||| | | ||| ||| ||| | ||| | ||| | | ||||
Sbjct 550 ACTTAGCAACGTCAACGGCT--G-TTTCTCCGGCTAGAGTTGTTCGAGCAATCG-GAGAG 605
Query 674 TTGGC-TAGGTCTATTGGTA-CAAGAGGTTTAGTCGCGGGACAAGCGA-TGGATATAAGC 730
|| || | | | ||||| | ||| ||| | || ||||| |||| | ||||| ||| |
Sbjct 606 TTAGCGAAAG-CCATTGG-ATCAAAAGGGCTCGTGGCGGGTCAAG-TAGTGGATCTAACC 662
Query 731 AGTGAAGGTTTGGACTTAAACGAAGTCGGATTAGAGCATT-TGGAGTTTATCCATGTCCA 789
|||| ||| ||||| |||||| ||||| |||||| || | ||||||||||| || ||
Sbjct 663 AGTGGAGGAATGGACCAAAACGACGTCGGCTTAGAG-GTTCTTGAGTTTATCCACGTTCA 721
Query 790 TAAAACCGCGGTTTTGTTGGAAACTGCCGCGGTTCTT-GGAGCCATTATTGGTGGTGGAT 848
||||||||| || ||||| || | || ||| | || |||||||| |||||||||| |
Sbjct 722 TAAAACCGCCGTGTTGTTAGAGGCGGCTACGG-TGTTAGGAGCCATCGTTGGTGGTGGTT 780
Query 849 CTGATGAAG-AGATTGA-AAGTGTGAGAAAG-TTTGCAAGGTGCATTGGATTGTTGTTTC 905
||||||||| || |||| ||| |||| ||| || || || |||||||||||||||||||
Sbjct 781 CTGATGAAGAAG-TTGAGAAG-CTGAG-AAGATTCGCGAGATGCATTGGATTGTTGTTTC 837
Query 906 AGGTGGTGGATGATATTTTGGACGAGACAAAGTCATCGGAGGAATTGGGAAAAACCGCCG 965
|||||||||| ||||||||||||| ||| ||||| ||||||||||||||||| |||||||
Sbjct 838 AGGTGGTGGACGATATTTTGGACGTGACGAAGTCGTCGGAGGAATTGGGAAAGACCGCCG 897
Query 966 GAAAAGATCAGCTCACCGGA-AAGCTAACGTATCCGAAGTTGATGGGG-TTGGAGAAATC 1023
||||||||| | | ||| | ||||| ||||||||||| | ||||| ||| |||||||
Sbjct 898 GAAAAGATCTGATTGCCG-ATAAGCTGACGTATCCGAAACTAATGGGTCTTG-AGAAATC 955
Query 1024 GAAAGAATTTG 1034
||||| ||||
Sbjct 956 TAAAGACTTTG 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5