BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932384
Length=289
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23830.1 | Symbols: | PapD-like superfamily protein | chr2:... 313 7e-85
AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle a... 207 3e-53
AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 | chr2:1861... 143 1e-33
> AT2G23830.1 | Symbols: | PapD-like superfamily protein | chr2:10143646-10144511
FORWARD LENGTH=450
Length=450
Score = 313 bits (169), Expect = 7e-85
Identities = 194/206 (94%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 21 ATGAGTAACAACGAGCTTCTCAAAATCGAGCCTATGTACCTTCAATTCCCTTTTGAATTG 80
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGTAACAACGAGCTTCTCGAAATCGAGCCTATGTATCTTCAATTCCCTTTTGAATTG 60
Query 81 AAGAAGCAGATGTCTTGCTCTCTTAACTCGACGAACAAGACAGCCAATAACGTGGCCTTT 140
|||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 61 AAGAAGCAGATGTCTTGCTCTCTTTACTTGACGAACAAGACAGACAATAACGTGGCCTTT 120
Query 141 AAGGTTAAGACGACAAATCCGAAAAATTATTGCGTTAGGCCTAATTATAGACTAATTCTT 200
||||||||||||||||||| ||| || ||||||||||||||||||||| |||| ||||||
Sbjct 121 AAGGTTAAGACGACAAATCGGAACAACTATTGCGTTAGGCCTAATTATGGACTTATTCTT 180
Query 201 CCAAAGTCGACTTGTGAAA-TTCTTG 225
||||||||||||||| ||| ||||||
Sbjct 181 CCAAAGTCGACTTGT-AAAGTTCTTG 205
> AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle
associated protein | chr3:22400395-22402702 FORWARD LENGTH=1207
Length=1207
Score = 207 bits (112), Expect = 3e-53
Identities = 181/214 (85%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 15 ATCGAGATGAGTAACAACGAGCTTCTCAAAATCGAGCCTAT-GTACCTTCAATTCCCTTT 73
|||| ||||||||||| ||||||||||| |||||||| | | | ||||||||||||||
Sbjct 185 ATCGGGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCG-ATCTTCAATTCCCTTT 243
Query 74 TGAATTGAAGAAGCAGATGTCTTGCTCTCT-TAACTCGACGAACAAGACAGCCAATAACG 132
|||||||||||||||||| ||||||||||| || | |||||||||||| | |||||| |
Sbjct 244 TGAATTGAAGAAGCAGATCTCTTGCTCTCTCTATTT-GACGAACAAGACCGACAATAATG 302
Query 133 TGGCCTTTAAGGTTAAGACGACAAATCCGAAAAATTATTGCGTTAGGCCTAATTA-TAGA 191
| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| | | ||
Sbjct 303 TTGCCTTTAAGGTTAAGACGACGAATCCGAAAAAGTATTGTGTTAGGCCTAAT-ACTGGA 361
Query 192 CTAATTCTTCCAAAGTCGACTTGTGAAATTCTTG 225
| |||| || | ||| ||||| ||| ||||||
Sbjct 362 GTTGTTCTCCCGAGGTCTACTTGCGAAGTTCTTG 395
> AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 | chr2:18610806-18613290
FORWARD LENGTH=1262
Length=1262
Score = 143 bits (77), Expect = 1e-33
Identities = 144/175 (82%), Gaps = 10/175 (6%)
Strand=Plus/Plus
Query 15 ATC-GAGATGAGTAACAACGAGCTTCTCAAAATCGAGCCTAT-GTACCTTCAATTCCCTT 72
||| ||||||||| ||||||||||||| ||||| ||| | | |||||||||||||||
Sbjct 217 ATCAGAGATGAGT---AACGAGCTTCTCACCATCGATCCTGTCG-ACCTTCAATTCCCTT 272
Query 73 TTGAATTGAAGAAGCAGATGTCTTGCTCTCT-TAACTCGACGAACAAGACAGCCAATAAC 131
||||||||||||||||||| ||||| ||||| || | | |||||||| | ||| |
Sbjct 273 TTGAATTGAAGAAGCAGATCTCTTGTTCTCTCTATTTGGGT-AACAAGACCGATAATTAT 331
Query 132 GTGGCCTTTAAGGTTAAGACGACAAATCCGAAA-AATTATTGCGTTAGGCCTAAT 185
|| ||||| |||||||||||||| ||||| ||| || || |||||||||||||||
Sbjct 332 GTCGCCTTCAAGGTTAAGACGACGAATCC-AAAGAAGTACTGCGTTAGGCCTAAT 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13320953485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5