BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932384 Length=289 Score E Sequences producing significant alignments: (Bits) Value AT2G23830.1 | Symbols: | PapD-like superfamily protein | chr2:... 313 7e-85 AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle a... 207 3e-53 AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 | chr2:1861... 143 1e-33 > AT2G23830.1 | Symbols: | PapD-like superfamily protein | chr2:10143646-10144511 FORWARD LENGTH=450 Length=450 Score = 313 bits (169), Expect = 7e-85 Identities = 194/206 (94%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 21 ATGAGTAACAACGAGCTTCTCAAAATCGAGCCTATGTACCTTCAATTCCCTTTTGAATTG 80 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGAGTAACAACGAGCTTCTCGAAATCGAGCCTATGTATCTTCAATTCCCTTTTGAATTG 60 Query 81 AAGAAGCAGATGTCTTGCTCTCTTAACTCGACGAACAAGACAGCCAATAACGTGGCCTTT 140 |||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| Sbjct 61 AAGAAGCAGATGTCTTGCTCTCTTTACTTGACGAACAAGACAGACAATAACGTGGCCTTT 120 Query 141 AAGGTTAAGACGACAAATCCGAAAAATTATTGCGTTAGGCCTAATTATAGACTAATTCTT 200 ||||||||||||||||||| ||| || ||||||||||||||||||||| |||| |||||| Sbjct 121 AAGGTTAAGACGACAAATCGGAACAACTATTGCGTTAGGCCTAATTATGGACTTATTCTT 180 Query 201 CCAAAGTCGACTTGTGAAA-TTCTTG 225 ||||||||||||||| ||| |||||| Sbjct 181 CCAAAGTCGACTTGT-AAAGTTCTTG 205 > AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle associated protein | chr3:22400395-22402702 FORWARD LENGTH=1207 Length=1207 Score = 207 bits (112), Expect = 3e-53 Identities = 181/214 (85%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 15 ATCGAGATGAGTAACAACGAGCTTCTCAAAATCGAGCCTAT-GTACCTTCAATTCCCTTT 73 |||| ||||||||||| ||||||||||| |||||||| | | | |||||||||||||| Sbjct 185 ATCGGGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCG-ATCTTCAATTCCCTTT 243 Query 74 TGAATTGAAGAAGCAGATGTCTTGCTCTCT-TAACTCGACGAACAAGACAGCCAATAACG 132 |||||||||||||||||| ||||||||||| || | |||||||||||| | |||||| | Sbjct 244 TGAATTGAAGAAGCAGATCTCTTGCTCTCTCTATTT-GACGAACAAGACCGACAATAATG 302 Query 133 TGGCCTTTAAGGTTAAGACGACAAATCCGAAAAATTATTGCGTTAGGCCTAATTA-TAGA 191 | |||||||||||||||||||| ||||||||||| ||||| |||||||||||| | | || Sbjct 303 TTGCCTTTAAGGTTAAGACGACGAATCCGAAAAAGTATTGTGTTAGGCCTAAT-ACTGGA 361 Query 192 CTAATTCTTCCAAAGTCGACTTGTGAAATTCTTG 225 | |||| || | ||| ||||| ||| |||||| Sbjct 362 GTTGTTCTCCCGAGGTCTACTTGCGAAGTTCTTG 395 > AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 | chr2:18610806-18613290 FORWARD LENGTH=1262 Length=1262 Score = 143 bits (77), Expect = 1e-33 Identities = 144/175 (82%), Gaps = 10/175 (6%) Strand=Plus/Plus Query 15 ATC-GAGATGAGTAACAACGAGCTTCTCAAAATCGAGCCTAT-GTACCTTCAATTCCCTT 72 ||| ||||||||| ||||||||||||| ||||| ||| | | ||||||||||||||| Sbjct 217 ATCAGAGATGAGT---AACGAGCTTCTCACCATCGATCCTGTCG-ACCTTCAATTCCCTT 272 Query 73 TTGAATTGAAGAAGCAGATGTCTTGCTCTCT-TAACTCGACGAACAAGACAGCCAATAAC 131 ||||||||||||||||||| ||||| ||||| || | | |||||||| | ||| | Sbjct 273 TTGAATTGAAGAAGCAGATCTCTTGTTCTCTCTATTTGGGT-AACAAGACCGATAATTAT 331 Query 132 GTGGCCTTTAAGGTTAAGACGACAAATCCGAAA-AATTATTGCGTTAGGCCTAAT 185 || ||||| |||||||||||||| ||||| ||| || || ||||||||||||||| Sbjct 332 GTCGCCTTCAAGGTTAAGACGACGAATCC-AAAGAAGTACTGCGTTAGGCCTAAT 385 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13320953485 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5