BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932388
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23890.1 | Symbols: | HAD-superfamily hydrolase, subfamily ... 2715 0.0
> AT2G23890.1 | Symbols: | HAD-superfamily hydrolase, subfamily
IG, 5'-nucleotidase | chr2:10170601-10173927 FORWARD LENGTH=2046
Length=2046
Score = 2715 bits (1470), Expect = 0.0
Identities = 1627/1705 (95%), Gaps = 2/1705 (0%)
Strand=Plus/Plus
Query 1 TGACTTTCTCCACCTCTCATTATGACTTCCACTCACCGTCTTCTTCCTCCTCTCGGAGCA 60
|||||||||||||| ||| |||||||||| ||| ||||||||||| |||||||||||||
Sbjct 59 TGACTTTCTCCACCAATCACTATGACTTCCTCTCGCCGTCTTCTTCTTCCTCTCGGAGCA 118
Query 61 TCGCTCACTAGAGGAAGATTTTCTTCCGATCAAATCCGAAATGGTTTTCTAAGAAGTTTC 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 119 TCGCTCACTAGAGGAAGATTTTCTTCCGATCAAATCCGAAATGGATTTCTAAGAAACTTC 178
Query 121 CGAGGATTCGCCACCGTTACTTCGTCGGAGCCGGCGTTAGCTAATCTGGAAGCGAAATGT 180
|| |||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||| |
Sbjct 179 CGTGGATTCGCCACCGTAACTTCGTCGGAACCGGCCTTAGCCAATCTGGAAGCGAAATAT 238
Query 181 GCCGTTGCGATT-CCGGAATGTTCTACAGTAGAAGACGAGATCACGAAGATCCGTCACGA 239
||||| ||| || || |||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 239 GCCGTAGCG-TTGCCAGAATGTTCAACAGTAGAGGACGAGATCACGAAGATCCGTCATGA 297
Query 240 ATTCGAGTTGGCGAAACAGAGGTTTCTTAATATCCCTGAAGCTATTAATAGTATGCCTAA 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 298 ATTCGAGTTAGCGAAACAGAGGTTTCTTAATATCCCTGAAGCTATTAATAGTATGCCGAA 357
Query 300 GATGAATCCTCAAGGGATATATGTGAATAAGAATCTGAGATTGGATAATATACAAGTTTA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATGAATCCTCAAGGGATATATGTGAATAAGAATCTGAGATTGGATAATATACAAGTTTA 417
Query 360 TGGATTTGATTATGATTACACTTTGGCGCATTACTCATCTCATTTACAGAGTTTGATCTA 419
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 418 TGGATTTGATTATGATTACACTTTGGCACATTACTCTTCTCACTTACAGAGTTTGATCTA 477
Query 420 TGATCTTGCTAAGCAACACATGGTTAATGAGTTTCGATATCCTGATGTTTGCATTCAGTT 479
||||||||| ||| |||| ||||||||||||||| |||||||||||||||||| ||||||
Sbjct 478 TGATCTTGCCAAGAAACATATGGTTAATGAGTTTAGATATCCTGATGTTTGCACTCAGTT 537
Query 480 TAAGTATGATCCTACTTTTCCTATCCGCGGGTTGTACTATGATAAACTAAAAGGATGCCT 539
| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 538 TGAGTATGATCCTACTTTTCCAATCCGTGGGTTGTACTATGATAAACTAAAAGGATGCCT 597
Query 540 TATGAAATTGGATTTCTTTGGTTCAATCGAGCCAGACGGGTGTTATTTTGGTCGTCGTAA 599
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 598 CATGAAATTGGATTTCTTCGGTTCAATCGAGCCAGATGGGTGTTATTTTGGTCGTCGTAA 657
Query 600 GCTTAGTAGGAAGGAAATAGAAAGTATGTATGGAACGCGACACATAGGTCGTGATCAAGC 659
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 658 GCTTAGTAGGAAGGAAATAGAAAGCATGTATGGAACGCGGCACATAGGTCGTGATCAAGC 717
Query 660 GAGAGGTCTGGTGGGATTGATGGATTTCTTCTGTTTCAGCGAGGCCTGTCTTATTGCAGA 719
||||||| |||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 718 GAGAGGTTTGGTGGGATTGATGGATTTCTTCTGTTTTAGCGAGGCGTGTCTTATAGCAGA 777
Query 720 CATGGTTCAATACTTTGTTGACGCCAAACTTGAGTTTGATGCCTCTAACATCTACAATGA 779
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CATGGTGCAATATTTTGTTGACGCCAAACTTGAGTTTGATGCCTCTAACATCTACAATGA 837
Query 780 TGTCAATCGTGCTATTCAACATGTCCATAGAAGTGGATTGGTTCATAGAGGAATTCTTGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGTCAATCGTGCTATTCAACATGTCCATAGAAGTGGATTGGTTCATAGAGGAATTCTTGC 897
Query 840 TGATCCCTACAGATATTTGCTGAAAAATGGTCAGCTTCTACGTTTCCTGAGAATGCTAAA 899
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGATCCCAACAGATATTTGCTAAAAAATGGTCAGCTTCTACGTTTCCTGAGAATGCTAAA 957
Query 900 AGATAAAGGAAAGAAGCtttttttGCTGACCAACTCTCCGTATCATTTTGTCGATGGCGG 959
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 958 AGATAAAGGAAAGAAGCTTTTTTTGCTGACCAACTCTCCGTATAATTTTGTTGATGGCGG 1017
Query 960 AATGCGCTTTCTAATGGAGGACTCTTTTGGCCTCAGAGATTCCTGGCGAGAGCTCTTTGA 1019
||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||
Sbjct 1018 AATGCGCTTTCTAATGGAGGAATCTTTTGGCTTCGGAGATTCCTGGCGAGAACTCTTTGA 1077
Query 1020 TGTTGTTATTGCTAAAGCAAATAAACCAGAATTTTACACATCTGAGCACCCTTTCCGTTG 1079
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGTTGTGATTGCTAAAGCAAATAAACCAGAATTTTACACATCTGAGCACCCTTTCCGTTG 1137
Query 1080 TTACGATTCGGTGGGGGATAATTTGGCATTTACAAAAGTGGATGCATTTGACCCAAAGAA 1139
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTATGATTCGGAGAGGGATAATTTGGCATTTACAAAAGTGGATGCATTTGACCCAAAGAA 1197
Query 1140 AGTTTACTACCATGGCTGTCTTAAATCCTTCCTTGAAATCACAAAGTGGCATGGCCCTGA 1199
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGTTTATTATCATGGTTGTCTTAAATCCTTCCTTGAAATCACAAAGTGGCATGGCCCTGA 1257
Query 1200 GGTGATTTATTTCGGAGATCACTTATTTAGTGATCTAAGAGGGCCTTCAAAAGCTGGTTG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGTGATTTATTTCGGAGATCACTTATTTAGTGATCTAAGAGGGCCTTCAAAAGCTGGTTG 1317
Query 1260 GCGAACTGCTGCCATAATTCATGAGCTTGAGCGAGAGATACAGATACAAAATGATGATAG 1319
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1318 GCGAACTGCTGCCATAATTCATGAGCTCGAGCGAGAGATACAGATACAAAATGATGATAG 1377
Query 1320 CTACCGGTTTGAGCAGGCCAAGTTCCATATTATCCAAGAGCTACTTGGTAGATTTCATGC 1379
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 1378 CTACCGGTTTGAGCAGGCCAAGTTCCATATTATCCAAGAGTTACTCGGTAGATTTCACGC 1437
Query 1380 GACTGTATCAAACAATCAGAGAAGCGAAGCATGCCAATCTCTATTGGATGAGCTGAACAA 1439
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 1438 GACTGTATCAAACAATCAGAGAAGTGAAGCATGCCAATCACTTTTGGATGAGCTGAACAA 1497
Query 1440 TGCGAGACAGAGAGCACGAGACACGATGAAACAAATGTTCAACAGATCGTTCGGAGCTAC 1499
|||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1498 TGCGAGGCAGAGAGCAAGAGACACGATGAAACAAATGTTCAACAGATCGTTTGGAGCTAC 1557
Query 1500 ATTTGTCACAGACACTGGTCAAGAATCAGCATTCTCTTATCACATCCACCAATATGCAGA 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1558 ATTTGTCACAGACACTGGTCAAGAATCAGCATTCTCTTATCACATCCACCAATACGCAGA 1617
Query 1560 CGTTTACACCAGTAAACCTGAGAACTTTCTGTTATACCGACCCGAAGCCTGGCTTCACGT 1619
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1618 CGTTTATACCAGTAAACCTGAGAACTTTCTGTTATACCGACCTGAAGCCTGGCTTCACGT 1677
Query 1620 TCCTTACGATATCAAGATCATGCCACATCATGTCAAGGTTGCTTCAAACCTTTTCAAAAC 1679
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1678 TCCTTACGATATCAAGATCATGCCACATCATGTCAAGGTTGCTTCAACCCTTTTCAAAAC 1737
Query 1680 CTGAGATTGGTTTCATTCCTCTAAG 1704
||||||| | ||||||||| |||||
Sbjct 1738 CTGAGATAGCTTTCATTCCCCTAAG 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84236514510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5