BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932390
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23900.1 | Symbols: | Pectin lyase-like superfamily protein... 2388 0.0
AT3G49162.1 | Symbols: | pseudogene of glycoside hydrolase fam... 305 6e-82
> AT2G23900.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:10174515-10176626 FORWARD LENGTH=1612
Length=1612
Score = 2388 bits (1293), Expect = 0.0
Identities = 1415/1475 (96%), Gaps = 3/1475 (0%)
Strand=Plus/Plus
Query 1 AACAAGTCAGAAGAATCAAAATGGAGTTCTCTATTAATCCTTCAACTCTAAAGATGATTC 60
||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 23 AACAAGTCATAAGAATC-AAATGGAGTTCTCTATCAATCCTTCAACTCTAAAGATGATTC 81
Query 61 GGACAAGTTTTTGTATATTAGTAGTTTTGGCAATTAGTAGTTTTTCGATGATGGAAGCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 GGACAAGTTTTTGTATATTAGTAGTTTTGGCAATTAGTAGTTTTTCGATGATGGAAGCTC 141
Query 121 GGGATCTAGGCT-GCAAAGGAAAGACAAATATTGAATATATGGCGTTGAATTGTCGAAAA 179
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 GGGATCTA-GCTAGCAAAGGAAAGACAAATATTGAATATATGGCGTTGAATTGTCGAAAA 200
Query 180 CATACCGCAGTTTTGACAGAATTTGGAGCAGTGGGTGATGGAAAGACCTCGAACACGAAA 239
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 201 CATACCGCAGTTTTGACAGAATTTGGAGCAGTTGGTGATGGAAAGACCTCGAACACAAAA 260
Query 240 GCGTTTAAAGAAGCCATAACTAAGCTTGCCCCCAAGGCGGCGGACGGTGGAGTGCAACTC 299
||||| |||||||||||||| |||||||| || ||||| || ||||||||||||||||||
Sbjct 261 GCGTTCAAAGAAGCCATAACCAAGCTTGCTCCAAAGGCAGCCGACGGTGGAGTGCAACTC 320
Query 300 ATTGTTCCACCAGGCAAATGGCTAACCGGAAGTTTCAACCTCAGCAGCCATTTTACTTTG 359
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 321 ATTGTTCCACCAGGAAAATGGCTAACCGGAAGTTTCAACCTCACCAGCCATTTTACTTTG 380
Query 360 TTCATCCAAAAAGGTGCAACTATTCTTGCTTCTCAGGATGAATCTGAATATCCAGTGGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TTCATCCAAAAAGGTGCAACTATTCTTGCTTCTCAGGATGAATCTGAATATCCAGTGGTT 440
Query 420 GCACCTTTGCCATCATACGGACAAGGAAGAGATGCAGCAGGACCAACATTTGCTAGTCTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GCACCTTTGCCATCATACGGACAAGGAAGAGATGCAGCAGGACCAACATTTGCTAGTCTA 500
Query 480 ATCTCTGGCACAAACCTAACTGATGTTGTTATCACCGGTAACAACGGAACGATCAACGGA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 ATCTCTGGCACAAACCTAACTGATGTTGTTATCACCGGTAACAACGGAACGATCAACGGG 560
Query 540 CAAGGAAAATACTGGTGGGTGAAGTATCGAAGTGGTGGATTTAAGAATATCACGAGACCT 599
|||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct 561 CAAGGAAAGTACTGGTGGGTGAAGTATCGCAGTGGTGGATTTAAGGGGATCACAAGACCT 620
Query 600 TACACAATCGAAATCATGTTCTCTCAAAATGTTCAGATCTCGAACATCACGATCATCGAT 659
||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 621 TACACAATCGAGATCATCTTCTCTCAAAACGTTCAGATCTCGAACATCACAATCATCGAT 680
Query 660 TCGCCTGCATGGAACATTCATCCCGTATATTGCAACAACGTCATCGTCAAAGGCGTTACC 719
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 681 TCGCCTGCATGGAATATTCATCCTGTATATTGCAACAATGTCATCGTCAAAGGCGTTACC 740
Query 720 ATTCTTGCTCCTATCGATTCTCCTAATACCGATGGAATCAACCCTGATTCGTGCACCAAC 779
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 741 ATTCTTGCTCCTATCGATTCTCCTAATACCGATGGAATCAACCCTGATTCATGCACCAAC 800
Query 780 ACATTGATAGAAGACTGTTACGTAGTCTCTGGAGACGATTGCATAGCCGTGAAGAGCGGT 839
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 801 ACATTGATAGAAGACTGTTACGTAGTCTCGGGAGACGATTGCATCGCCGTGAAGAGCGGT 860
Query 840 TGGGATCAGTTTGGTATCAAAGTCGGCATGCCAACTAAACAACTGTCCATCCGACGGCTC 899
|||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 861 TGGGATCAGTTTGGTATCAAAGTCGGCATGCCAACTCAACAATTGTCTATCCGACGGCTC 920
Query 900 ACATGCATCTCTCCCGACAGCGCAGGAATAGCACTTGGAAGCGAAATGTCCGGTGGAATC 959
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 921 ACATGCATCTCTCCCGACAGCGCTGGAATAGCACTCGGAAGTGAAATGTCCGGTGGAATC 980
Query 960 AAAGACGTTAGAATCGAAGACATTACGTTACTCCAGACACAATCCGCTATCCGAATCAAA 1019
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 981 AAAGACGTTAGAATCGAAGACATTACATTACTTCAGACACAATCCGCTATCCGAATCAAA 1040
Query 1020 ACCGCAGTTGGTCGTGGTGGTTACGTTAAGGATATATTCGCCCGGAGGTTCACAATGAAA 1079
||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 1041 ACCGCGGTTGGTCGTGGTGGTTATGTTAAGGATATTTTCGCCAGGAGGTTCACAATGAAA 1100
Query 1080 ACCATGAAATATGTTTTTTGGATGAGCGGTGCTTATAACCAACACCCCGCTTCCGGTTTT 1139
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ACAATGAAATACGTTTTCTGGATGAGCGGTGCTTATAACCAACACCCCGCTTCCGGTTTT 1160
Query 1140 GATCCCAAGGCTATGCCCGAGATTACGAATATTAACTACCGTGACATGACCGCGGATAAT 1199
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1161 GATCCCAAGGCTATGCCCGTGATTACGAATATCAACTACCGTGACATGACCGCGGATAAT 1220
Query 1200 GTCACACAACCCGCAAGGCTCGATGGGTTCAAGAACGATCCATTCACAAAGATATGTATG 1259
||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1221 GTCACGCAACCTGCGAGGCTCGATGGGTTCAAGAACGATCCTTTCACAAAGATATGTATG 1280
Query 1260 TCGAATATAAAGATTGATTTGGCTGCTGAGCCAAAGAAGCTGTTGTGGAATTGTACAAAC 1319
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 1281 TCGAATATAAAGATTGATTTGGCTGCTGAGCCGAAGAAGTTGTTGTGGAATTGTACAAGC 1340
Query 1320 ATCTCCGGAGTTTCGAGCAAGGTGACACCCAAACCATGTAGTTTGTTGCCGGAGAAAGGA 1379
||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1341 ATCTCTGGAGTTTCGAGCAAGGTTACACCTAAACCGTGTAGTTTGTTGCCGGAGAAAGGA 1400
Query 1380 GCACCGGTGGACTGTGCTTTTCCGGTTGATAAGATTCCTATTGAATCTGTTGTCCTGAAC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 GCACCGGTGGACTGTGCTTTTCCGGTTGATAAGATTCCTATTGAATCTGTTGTCCTGAAC 1460
Query 1440 AAATGCTCTGCTTAGAGATTGTGAACGGAGATAAT 1474
|||||||||||||||||||||||||||||||||||
Sbjct 1461 AAATGCTCTGCTTAGAGATTGTGAACGGAGATAAT 1495
> AT3G49162.1 | Symbols: | pseudogene of glycoside hydrolase family
28 protein | chr3:18225379-18226805 REVERSE LENGTH=1192
Length=1192
Score = 305 bits (165), Expect = 6e-82
Identities = 384/484 (79%), Gaps = 38/484 (8%)
Strand=Plus/Plus
Query 149 TATTGAATATATGGCGTTGAATTGTCGAAAACATACCGCAGTTTTGACAGAA-TTTGGAG 207
|||||||||| |||| |||||||| || ||||| | || |||||||| ||| |||||||
Sbjct 105 TATTGAATATTTGGCTTTGAATTGCCGGAAACACAGTGCGGTTTTGAC-GAATTTTGGAG 163
Query 208 C-AGTGGGTGATGGAAAGA-CCTCGAACACGAAAGCGTTTAAAGAAGCCATAACTAAGCT 265
| | | || |||||||| | |||| ||||| ||||||||| |||||| |||| ||||||
Sbjct 164 CTA-TTGGAGATGGAAA-ACCCTCAAACACCAAAGCGTTTCGAGAAGCAATAAGTAAGCT 221
Query 266 TGCCCCCAAGGCGGCGGACGGTGGAGTGCAACTCATTGTTCCACCAGGCAAATGGCTAAC 325
| | || |||||| ||||||||||| ||||||||||| || || || | ||||| ||
Sbjct 222 TACTCCGTTGGCGGCTGACGGTGGAGTCCAACTCATTGTACCGCCGGGGAGTTGGCTCAC 281
Query 326 CGGAAGTTTCAACCTCAGC-AGCCATTTTACTTTGTTCATCCAAAAAGGTGCAACTATTC 384
||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||
Sbjct 282 CGGAAGTTTCAACCTCA-CAAGCCATTTTACTTTGTTTATCCAGCAAGGTGCAACTATTC 340
Query 385 TTGCTTCTCAGGATGAATCTGAATATCC-AGTGGTTGCACCTTTGCCATCATACGGACAA 443
|||||||||||||||| ||||||||||| | || || |||||||||| ||||||||| |
Sbjct 341 TTGCTTCTCAGGATGAGTCTGAATATCCTA-TGATTCCACCTTTGCCGTCATACGGAGAT 399
Query 444 GGAAGAGATGCAGCAGGACCAACATTTGCTAGTCTAATCTCTGGCACAAACCTAACTGAT 503
| ||| | | | | || ||| ||| || | || | |||||||| |||
Sbjct 400 GCAAG-GTTT-A-CTGG-------TTT---AGTATA--C---GGAAGTAACCTAACCGAT 441
Query 504 GTTGTTATCACCGGTAACAACGGAACGA-TCAACGGACAAGGAAAAT-ACTGGTGGGTGA 561
|||||||||||||||||||| |||||| | || |||||||| || | | |||||| |||
Sbjct 442 GTTGTTATCACCGGTAACAAAAGAACGACT-AATGGACAAGGGAAGTCA-TGGTGGTTGA 499
Query 562 AGTATCGAAGTGGTGGATTT-AAGA--ATATCACGAGACCTTACACAATCGAAATCATGT 618
||||||||||||| || ||| ||| |||||| ||||||| ||||||||||| |
Sbjct 500 AGTATCGAAGTGGCGG-TTTCAAGTCGATATCA--AGACCTTTGTTGATCGAAATCATCT 556
Query 619 TCTC 622
||||
Sbjct 557 TCTC 560
Score = 202 bits (109), Expect = 9e-51
Identities = 362/482 (75%), Gaps = 25/482 (5%)
Strand=Plus/Plus
Query 996 ACACAATCCGCTATCCGAATCAAAACCGC-AGTTGGTCGTGGTGGTTACGTTAAGGATAT 1054
||||||||||||||||||||||||||||| | | || ||||| |||||| | || || ||
Sbjct 590 ACACAATCCGCTATCCGAATCAAAACCGCTA-TAGGACGTGGCGGTTACATCAAAGACAT 648
Query 1055 ATTCGCCCGGAGGTTCACAATGAAAACCATGAAATATGTTTTTTGGATGAGCGGTGCTTA 1114
||||| |||| || || ||||| || |||||||| ||||| ||||||| |||| | ||
Sbjct 649 TTTCGCTAGGAGATTTACGATGAAGACGATGAAATACGTTTTCTGGATGACCGGTTCGTA 708
Query 1115 TAACCAACACCCCGCTTC-CGGTTTTGATCCCAAGGC-TATGCCCGAGATTA-CGAATAT 1171
||| | || |||| | ||| |||||||||||||| | |||| ||||||| | |||||
Sbjct 709 TAAGCTGCATCCCG-TAGGCGGGTTTGATCCCAAGGCGT-TGCCGGAGATTAGC-AATAT 765
Query 1172 TAACTACCGTGACATGACCGCGGATAATGTCACACAACCCG-CAAGGCTCGATGGGTTCA 1230
| ||||||||||||||||| || || || ||| | || ||| ||| || || |||
Sbjct 766 CCATTACCGTGACATGACCGCAGAAAACGTTACA-ATTTCGGCAAAGCTAGAAAGGATCA 824
Query 1231 AGAACGATCCATTCACAAAGAT-ATGTATGTCGAATATAAAGATTGATTTGGCTGCTG-A 1288
|||| | |||||| || | | ||| ||||||| | | | || | |||| | || | |
Sbjct 825 AGAATGGTCCATTTACGG-GTTTATGCATGTCGAGTGTGACTATAGCTTTGTC-GCCGGA 882
Query 1289 GCCAAAGAAGCTGTTGTGGAATTGTACAAACATCTCCGGAGTTTCGAGCAAGGTGACACC 1348
|| ||||||||| |||||| || || | ||||||||||| | || | ||| |||||
Sbjct 883 CCCGAAGAAGCTGCAGTGGAACTGCACGGATGTCTCCGGAGTTACTAGTAGGGTTACACC 942
Query 1349 CAAACCATGTAGTTTGTTGCCGGAGAA-AGGAGC-ACC--GG--TG-GACTGTGCTTTTC 1401
| || || |||||||| ||||| || || | | || || | ||||||| |||||
Sbjct 943 GGAGCCGTGCAGTTTGTTACCGGATAAGAGAA-CTACAATGGACTCAGACTGTGATTTTC 1001
Query 1402 CGGTTGATAAGATTCCTATTGA-ATCTGTTGTCCTGAACAAATGCTCTGCTTAGAGAT-T 1459
| ||||||||||||||||| | |||||| |||||||||| | |||||||| || |
Sbjct 1002 CCACGGATAAGATTCCTATTGAGAG-TGTTGTGTTGAACAAATGTTATGCTTAGAAATGT 1060
Query 1460 GT 1461
||
Sbjct 1061 GT 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72690389160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5