BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932393
Length=286
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear ribonuc... 442 8e-124
> AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear ribonucleoprotein
G | chr2:10182251-10183240 FORWARD LENGTH=559
Length=559
Score = 442 bits (239), Expect = 8e-124
Identities = 267/281 (95%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 3 TCAATTCCGATTCTGCAACCATGAGTCGGTCAGGACAGCCTCCGGATCTCAAGAAGTACA 62
|||||||||||| |||||| |||||||| ||||| |||||||||||||| ||||||||||
Sbjct 83 TCAATTCCGATTTTGCAACTATGAGTCGTTCAGGTCAGCCTCCGGATCTTAAGAAGTACA 142
Query 63 TGGATAAGAAGCTCCAAATCAAGCTTAATGCTAACCGAATGGTTACTGGAACTCTTCGTG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 TGGATAAGAAGCTCCAAATCAAGCTTAATGCTAACCGAATGGTTACTGGAACTCTTCGTG 202
Query 123 GCTTTGACCAGTTTATGAATCTTGTTGTGGATAACACTGTCGAGGTGAACGGTAATGACA 182
| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 203 GGTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAGGTGAACGGTAACGACA 262
Query 183 AAACCGACATCGGTATGGTGGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTG 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 AAACCGACATCGGGATGGTGGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTG 322
Query 243 AACCTGTGGGCAGATCTTCTTAGCTCGTTATATGCATCGGT 283
|||| |||||||||||||||||||||||||||| ||| |||
Sbjct 323 AACCAGTGGGCAGATCTTCTTAGCTCGTTATATTCATTGGT 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13170150238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5