BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932394

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G23940.1 | Symbols:  | Protein of unknown function (DUF788) ...   896    0.0  


> AT2G23940.1 | Symbols:  | Protein of unknown function (DUF788) 
| chr2:10183966-10185331 FORWARD LENGTH=989
Length=989

 Score =  896 bits (485),  Expect = 0.0
 Identities = 538/564 (95%), Gaps = 2/564 (0%)
 Strand=Plus/Plus

Query  1    GCTAGAATCGGAGATTAAGAATGGCGAATCAAGGAGCGAAAAAACGAAAAGAAGAGAACG  60
            |||| |||| |||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  214  GCTAAAATCCGAGATTAAGAATGGCGAATCAAGGAGCGAAGAAACGAAAGGAAGAGAACG  273

Query  61   -CACGGCACATGGCTAAGCTCCGTCGTCTCATCATCGCTTCCAATGTTGTGTACTTCGTT  119
             ||   ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct  274  CCA-AACACATGGCTAAGCTCCGTCGTATCATCATCGCTTCCAATGCTGTGTATTTCGTT  332

Query  120  GTGAGGATGTTGATTTTCTACTCAAGCTTTACTTGGAAACATTGGATCGGCTTAGTGATA  179
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  333  GTGAGGATGTTGATTTTCTACTCAAGCTTTACTTGGAAACATTGGATCGGTTTAGTGATA  392

Query  180  ACTTCGCTGGCTTACGCGTTTCCATATAAGCAGCTTGAACAAATGGCAAAACCTAGTGTT  239
            ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct  393  ACTTCGCTGGCTTACGCGTTTCCTTATAAGCAGCTTGATCAAATGGCTAAACCTAGTGTT  452

Query  240  ACTGATGATGGTGAGCTTCTTGATGGTGGATTTGACATGACCACTGGTGGAATCTGTGGA  299
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct  453  ACTGATGATGGTGAGCTTATTGATGGTGGATTTGACATGACCACTGGTGGAATCTGCGGA  512

Query  300  TATTTGCATGATGTAATCTATATCACTTGCTTTGTTCAGCTAGCTTCTATCATCTCTGGG  359
            |||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct  513  TATTTGCACGATGTCATCTATATCACTTGCTTTGTTCAGCTAGCTTCCATCATCACTGGG  572

Query  360  AAGTTTTGGTATACGTATCTAGTGATTCCTGCATTTGGAGTGTATAAAGCGTCTGGTCTT  419
            ||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct  573  AAGTTTTGGTACACGTATCTTGTGATTCCTGCGTTTGGAGTGTATAAAGCTTCTGGTCTT  632

Query  420  ATTCGAGGATTCATGTCACAAGGTTCAGAGGGAGGTGTGGAAGATGAAAAGTCTCGTAAA  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  633  ATTCGAGGATTCATGTCACAAGGTTCAGAGGGAGGTGTGGAAGATGAAAAGTCTCGTAAA  692

Query  480  AAGAGAGAGAAGATGGAGAGGAAAGCTTCGAGAGGGCAAGTCGTCAAGACGAGGACAAGA  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  693  AAGAGAGAGAAGATGGAGAGGAAAGCTTCGAGAGGGCAAGTCGTCAAGACGAGAACAAGA  752

Query  540  TGAATGTGTTGTTATAGAATACAA  563
            ||||||||||||||||||||||||
Sbjct  753  TGAATGTGTTGTTATAGAATACAA  776



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27427844262


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5