BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932414

Length=874
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24080.1 | Symbols:  | Protein of unknown function (DUF295) ...   575    3e-163
  AT5G25300.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box dom...   145    9e-34 


> AT2G24080.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr2:10237604-10238779 REVERSE LENGTH=1125
Length=1125

 Score =  575 bits (311),  Expect = 3e-163
 Identities = 443/504 (88%), Gaps = 19/504 (4%)
 Strand=Plus/Plus

Query  55   CAAAACGAAGCGGGAGTCCTAAATATAATGAGTGTGCTAAGGCCTTGCGTC-CG--CCTT  111
            |||||||||||||||||||||||||||||||| |||||||| ||   ||||  |  ||  
Sbjct  50   CAAAACGAAGCGGGAGTCCTAAATATAATGAGCGTGCTAAGACCCCACGTCTGGATCCAA  109

Query  112  TGGTTGGATCTCCACTGTTGTTGCTGTCTCAAGAAGAGGGTGGTTGTT-GTCTATACAAG  170
               | ||||||||  || ||||| |||||| |||||||||||||| || |||| ||||||
Sbjct  110  AACTCGGATCTCCGTTGCTGTTGTTGTCTCCAGAAGAGGGTGGTT-TTCGTCTGTACAAG  168

Query  171  CCAGAAGAAGATAAGTTTTACGAGACGAAGAGTGACTTTTCAAGGTATCGATTCCTGGCA  230
            ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct  169  CCAGACGAAGATAAGTTTTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCTAGCA  228

Query  231  AGCTCGGGTAAGTGGTTCCTGGTGGTAGATTCTAGATCGGATCTCTATATCATAGATGTG  290
            |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct  229  AGCTCGGGTAAGTGGTTCCTAGTGGTAGATTCTAGATGGGATCTCTATATCATAGATGTG  288

Query  291  TTTAGCGATGAGAGGATCCA-TCTTCCACCTTTAGAGTCAATCAACGGTGGCCTTTATAT  349
            |||||||||||||||||| | |||||||||| ||||||||| | | ||||||||||||||
Sbjct  289  TTTAGCGATGAGAGGATC-AGTCTTCCACCTCTAGAGTCAACCCAGGGTGGCCTTTATAT  347

Query  350  GGTTGAGCGAGTAGGATCTAATGAATTCAAGGTTACCTTAATT--AGG--G-C-------  397
            ||||||||||| |||||||||||| ||||||||||| ||||||  |||  | |       
Sbjct  348  GGTTGAGCGAGAAGGATCTAATGACTTCAAGGTTACGTTAATTGGAGGCAGTCTGAAAGA  407

Query  398  CGACAAGAATGGAGACTTTGTTGTTGTGTGGCAATTTGAGGATGGCCAATTTTTAGGCTT  457
            |||||||||||| |||||||||||||| |||||||||||| | |||||||||||||| ||
Sbjct  408  CGACAAGAATGGTGACTTTGTTGTTGTCTGGCAATTTGAGCAAGGCCAATTTTTAGGGTT  467

Query  458  TTGCAAGAAAGGGGATTTACATTACCGCGATATTCCAATACGGGTCGATGTTCGCAGGGA  517
            |||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct  468  TTGCAAGAAAGGAGATTTACATTACCGTGATATTCCAATACGTGTCGATGTTCGGAGGGA  527

Query  518  GTTTCGAGGCTTAAAAGATGTGGT  541
            ||| |||||| || ||||||||||
Sbjct  528  GTTCCGAGGCCTACAAGATGTGGT  551


> AT5G25300.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box domain, 
cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana 
protein match is: F-box family protein with a domain 
of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast 
hits to 224 proteins in 5 species: Archae - 0; Bacteria - 
0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other 
Eukaryotes - 3 (source: NCBI BLink). | chr5:8780258-8783093 
FORWARD LENGTH=1434
Length=1434

 Score =  145 bits (78),  Expect = 9e-34
 Identities = 176/222 (79%), Gaps = 12/222 (5%)
 Strand=Plus/Plus

Query  150  GGTGGTTGTTG-TCTATACAAGCCAGAAGAAGAT-AAGTTTTACGAGACGAAGAGTGACT  207
            |||||||| || | ||||||| || || |||| | |||  |||| | || || || ||||
Sbjct  73   GGTGGTTG-TGCTATATACAACCCGGACGAAGCTAAAG-ATTACAAAACAAAAAGAGACT  130

Query  208  TTTCAAGGTA-TCGATTCCTGGCAAGCTCGGGTAAGTGGTTCCTGGTGGTAGATTCTAGA  266
              || ||| | ||||||| |||||| ||| | ||| |||||| ||||| |||||||| | 
Sbjct  131  CCTC-AGGGATTCGATTCTTGGCAAACTCAGTTAACTGGTTCTTGGTGCTAGATTCTCGT  189

Query  267  TCGGATCTCTATATCATAGATGTGTTTAGCGATGAGAG-GATCCATCTTCCACCTTTAGA  325
            ||  |||||||||||||||||||||||||||| || |  |||| ||||||||||  ||||
Sbjct  190  TCCAATCTCTATATCATAGATGTGTTTAGCGA-GAAAAAGATCGATCTTCCACCCCTAGA  248

Query  326  GTCAATCAACGG-TGGCCTTTATA-TGGTTGAGCGAGTAGGA  365
             |||||||| |  ||||||||||| |  |||||| |||||||
Sbjct  249  ATCAATCAA-GAATGGCCTTTATAGTC-TTGAGCAAGTAGGA  288



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42648790803


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5