BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932420

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G30800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   564    3e-160
  AT2G24110.1 | Symbols:  | 40S ribosomal protein S11, expressed ...   217    1e-55 


> AT4G30800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr4:15001134-15002671 FORWARD LENGTH=841
Length=841

 Score =  564 bits (305),  Expect = 3e-160
 Identities = 429/489 (88%), Gaps = 8/489 (2%)
 Strand=Plus/Plus

Query  15   TCAACAATGGCGGAGCAGACGGAGAAAGCG-TTCTTGAAGCAACCAAAGGTCTTCTTGAG  73
            ||||| ||||| |||||||||||||| ||| ||||| ||||||||||| || ||||| ||
Sbjct  77   TCAACCATGGCAGAGCAGACGGAGAAGGCGTTTCTT-AAGCAACCAAAAGTTTTCTTAAG  135

Query  74   CTCGAAGAAATCTGGTAAAGGAAAGAGACCTGGAAAAGGAGGTAATCGTTTCTGGAAGAA  133
            |||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct  136  CTCGAAGAAATCTGGTAAGGGAAAGAGGCCTGGTAAAGGAGGTAATCGTTTCTGGAAGAA  195

Query  134  CATTGGTCTTGGTTTCAAGACTCCCAGAGAAGCTACTGAAGGTGCATACATTGACAAGAA  193
            |||||| ||||||||||| ||||| ||||| |||| ||||||  ||||||||||| ||||
Sbjct  196  CATTGGCCTTGGTTTCAAAACTCCAAGAGAGGCTATTGAAGGAACATACATTGACCAGAA  255

Query  194  ATGTCCGTTTACTGGGACGGTTTCGATTAGAGGTCGTATCTTAG-CAGGTACTTGTCACA  252
            |||||| |||||||| |||||||| || || ||||| ||||| | | || ||||||||||
Sbjct  256  ATGTCCCTTTACTGGTACGGTTTCAATCAGGGGTCGCATCTT-GTCTGGAACTTGTCACA  314

Query  253  GTGCGAAA-ATGCAGAGGACTATCATTGTTCGGAGGAACTATCTTCATTTTGTTAAGAAG  311
            |||| ||| ||||||||||| ||||||||||| ||| |||||||||||||||| ||||||
Sbjct  315  GTGC-AAAGATGCAGAGGACGATCATTGTTCGTAGGGACTATCTTCATTTTGTGAAGAAG  373

Query  312  TATCAGAGG-TATGAGAAAAGGCATTCGAACATTCCCGCTCATGTCTCACCGTGTTTCCG  370
            |||| || | ||||||||||| || || |||||||| |||||||| || ||||| |||||
Sbjct  374  TATC-GAAGATATGAGAAAAGACACTCAAACATTCCTGCTCATGTTTCCCCGTGCTTCCG  432

Query  371  TGTCAAAGAAGGAGATCATGTGATCATCGGGCAATGCAGACCGTTGTCAAAGACGGTGAG  430
            ||||||||||||||||| ||| | ||| ||||||||||| || |||||||||||||||||
Sbjct  433  TGTCAAAGAAGGAGATCGTGTTACCATTGGGCAATGCAGGCCATTGTCAAAGACGGTGAG  492

Query  431  GTTTAACGTCCTAAAGGTCATTCCAGCTGGGAGTTCTGCTATAGGGAAAAAAGCATTCTC  490
            ||| || ||||| ||||||||||| ||||| || ||| |||| ||||||||||||||| |
Sbjct  493  GTTCAATGTCCTGAAGGTCATTCCGGCTGGAAGCTCTTCTATCGGGAAAAAAGCATTCAC  552

Query  491  TGGAATGTA  499
            |||||||||
Sbjct  553  TGGAATGTA  561


> AT2G24110.1 | Symbols:  | 40S ribosomal protein S11, expressed 
pseudogene, similar to GB:J05216; blastp match of 76% identity 
and 8.9e-54 P-value to GP|24417185|dbj|BAC22544.1||AP003932 
putative ribosomal protein S11 {Oryza sativa (japonica 
cultivar-group)} | chr2:10247817-10248834 REVERSE LENGTH=1018
Length=1018

 Score =  217 bits (117),  Expect = 1e-55
 Identities = 145/157 (92%), Gaps = 8/157 (5%)
 Strand=Plus/Plus

Query  173  AGGTGCATACATTGACAAGAAATGTCCGTTTACTGGGACGGTTTCGATTAGAGGTCGTAT  232
            ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct  338  AGGTGCATACATTGACAAGAAATGTCCATTTACTGGGACAGTTTCGATTAGAGGTCGTAT  397

Query  233  CTTAGCAGGTACTTGTCACAGTGCGAAAATGCAGAGGAC--T-AT-C-AT--T-GTTCGG  284
            |||||||||||||||||||||||||||||||||||||||  | || | ||  | ||| ||
Sbjct  398  CTTAGCAGGTACTTGTCACAGTGCGAAAATGCAGAGGACCATCATTCCATCATTGTTAGG  457

Query  285  AGGAACTATCTTCATTTTGTTAAGAAGTATCAGAGGT  321
            |||||||||||||||||||||||||||||||| ||||
Sbjct  458  AGGAACTATCTTCATTTTGTTAAGAAGTATCAAAGGT  494


 Score =  172 bits (93),  Expect = 2e-42
 Identities = 100/103 (97%), Gaps = 1/103 (1%)
 Strand=Plus/Plus

Query  308  GAAGTATC-AGAGGTATGAGAAAAGGCATTCGAACATTCCCGCTCATGTCTCACCGTGTT  366
            |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  559  GAAGTATCTACAGGTATGAGAAAAGGCATTCGAACATTCCCGCTCATGTCTCACCGTGTT  618

Query  367  TCCGTGTCAAAGAAGGAGATCATGTGATCATCGGGCAATGCAG  409
            ||||||||||||||||||||||| |||||||||||||||||||
Sbjct  619  TCCGTGTCAAAGAAGGAGATCATTTGATCATCGGGCAATGCAG  661


 Score =  169 bits (91),  Expect = 3e-41
 Identities = 106/113 (94%), Gaps = 1/113 (1%)
 Strand=Plus/Plus

Query  407  CAGACCGTTGTCAAAGACGGTGAGGTTTAACGTCCTAAAGGTCATTCCAGCTGGGAGTTC  466
            |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct  751  CAGACCGTTGTCAAAGACGGTGAGGTTTAACGTCTTAAAGGTCATTCCTGCTGGGAGTTC  810

Query  467  TGCTATAGGGAAAAAAGCATTCTCTGGAATGTAGAGACTTGTTAAAGTTGTTG  519
            |||||||||||||||||||||| | ||||||||||||||| ||||  ||||||
Sbjct  811  TGCTATAGGGAAAAAAGCATTCACCGGAATGTAGAGACTTCTTAAC-TTGTTG  862



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24916136912


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5