BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932431 Length=406 Score E Sequences producing significant alignments: (Bits) Value AT3G10820.2 | Symbols: | Transcription elongation factor (TFII... 342 1e-93 > AT3G10820.2 | Symbols: | Transcription elongation factor (TFIIS) family protein | chr3:3387200-3391003 FORWARD LENGTH=2211 Length=2211 Score = 342 bits (185), Expect = 1e-93 Identities = 258/293 (88%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 21 ATGTTTACTGTTGCAATGAGAAGCATCACTAGTTTGGTTTATCTCGAAAAGGTCAGGGAG 80 ||||||||| ||||||||||| || | ||||||||| ||||||||||||| ||||| || Sbjct 1922 ATGTTTACTATTGCAATGAGATGCGCCCCTAGTTTGGCTTATCTCGAAAAGTTCAGGCAG 1981 Query 81 TACATGGTTCAGGCGACTGAGAAGAATCTGGAAGATGAGAATGCTGATACTCTGACGAAC 140 ||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1982 TACATGGCTCAGGCGAATGAGAAGAATCTGGAAGATGAGACTGCTGCTACTCTGACGAAC 2041 Query 141 AAGAAGCATGTTACCCTCTTGGCTGAGGAAGACTGCACAGTACCTTA-CACCTTTGGCTC 199 ||||||||||| |||||||||||||||||||||||||||| |||| |||| | ||| Sbjct 2042 AAGAAGCATGTCGCCCTCTTGGCTGAGGAAGACTGCACAGT-CCTTTGCACCCCTCGCTT 2100 Query 200 TGA-TATTCAAAATGTTGCCGGCTTTGTT-TGTCCAGAAACTTCGCGTTGGCTTGAAGAG 257 ||| | ||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||| Sbjct 2101 TGAGT-TTCAAAATGTTGCCGACTTTGTTCT-TCCAGAAACTTTGCGTTGGCTTGACGAG 2158 Query 258 TTGGAACGTCAAGACGGCTTCAAGCTCCAAGATAATCAACTGGACTGTGTAAA 310 ||||| | ||||| | ||||||||||||||| |||||||||||||| || ||| Sbjct 2159 TTGGAGCTTCAAGCCAGCTTCAAGCTCCAAGCTAATCAACTGGACTCTGCAAA 2211 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19202280118 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5