BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932431

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10820.2 | Symbols:  | Transcription elongation factor (TFII...   342    1e-93


> AT3G10820.2 | Symbols:  | Transcription elongation factor (TFIIS) 
family protein | chr3:3387200-3391003 FORWARD LENGTH=2211
Length=2211

 Score =  342 bits (185),  Expect = 1e-93
 Identities = 258/293 (88%), Gaps = 6/293 (2%)
 Strand=Plus/Plus

Query  21    ATGTTTACTGTTGCAATGAGAAGCATCACTAGTTTGGTTTATCTCGAAAAGGTCAGGGAG  80
             ||||||||| ||||||||||| ||  | ||||||||| ||||||||||||| ||||| ||
Sbjct  1922  ATGTTTACTATTGCAATGAGATGCGCCCCTAGTTTGGCTTATCTCGAAAAGTTCAGGCAG  1981

Query  81    TACATGGTTCAGGCGACTGAGAAGAATCTGGAAGATGAGAATGCTGATACTCTGACGAAC  140
             ||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  1982  TACATGGCTCAGGCGAATGAGAAGAATCTGGAAGATGAGACTGCTGCTACTCTGACGAAC  2041

Query  141   AAGAAGCATGTTACCCTCTTGGCTGAGGAAGACTGCACAGTACCTTA-CACCTTTGGCTC  199
             |||||||||||  |||||||||||||||||||||||||||| ||||  ||||  | ||| 
Sbjct  2042  AAGAAGCATGTCGCCCTCTTGGCTGAGGAAGACTGCACAGT-CCTTTGCACCCCTCGCTT  2100

Query  200   TGA-TATTCAAAATGTTGCCGGCTTTGTT-TGTCCAGAAACTTCGCGTTGGCTTGAAGAG  257
             ||| | ||||||||||||||| ||||||| | ||||||||||| |||||||||||| |||
Sbjct  2101  TGAGT-TTCAAAATGTTGCCGACTTTGTTCT-TCCAGAAACTTTGCGTTGGCTTGACGAG  2158

Query  258   TTGGAACGTCAAGACGGCTTCAAGCTCCAAGATAATCAACTGGACTGTGTAAA  310
             ||||| | ||||| | ||||||||||||||| |||||||||||||| || |||
Sbjct  2159  TTGGAGCTTCAAGCCAGCTTCAAGCTCCAAGCTAATCAACTGGACTCTGCAAA  2211



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19202280118


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5