BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932434

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65430.1 | Symbols: ARI8, ATARI8 | IBR domain-containing pro...   233    6e-61


> AT1G65430.1 | Symbols: ARI8, ATARI8 | IBR domain-containing protein 
| chr1:24300898-24306236 REVERSE LENGTH=2048
Length=2048

 Score =  233 bits (126),  Expect = 6e-61
 Identities = 150/162 (93%), Gaps = 0/162 (0%)
 Strand=Plus/Plus

Query  3    GAGTAGaaaaaaaTCTCAATGGATGCTGATGACGATTTCTACAGCGGCACCGAAAACTAC  62
            ||| |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  60   GAGAAGAAGAGAATCTCAATGGAAGCTGATGACGATTTCTACAGCGGCACCGAAAACTAC  119

Query  63   TCCGATTACGCTGACTCCGACGAAGATGATGCCGACGCCGATTACGAGTTCGTTGAAGAC  122
            ||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||| |||
Sbjct  120  TCCGATTACGCCGACTCCGACGAAGATGACGCCGACGGCGAGTACGAGTTCGTTGACGAC  179

Query  123  GCCGCTGATGATTCCGATGACCTTATCTTCTGCCGCCGCCAG  164
            || ||||||||||||||||||||||||||| | |||||||||
Sbjct  180  GCTGCTGATGATTCCGATGACCTTATCTTCCGTCGCCGCCAG  221



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5