BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932444

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40780.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   289    1e-77


> AT2G40780.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr2:17021505-17022916 FORWARD LENGTH=1054
Length=1054

 Score =  289 bits (156),  Expect = 1e-77
 Identities = 173/181 (96%), Gaps = 2/181 (1%)
 Strand=Plus/Plus

Query  16   AGAAGAGATGAACAAAGGAAGAAGGAATCTGAAACAAGCGGCGTCGGAGCAGGATTTCAC  75
            |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  364  AGAAGAGATGAACAGAGGAAGAAGGAATCTGAAACAAGCGGCGTCGGACCAGGATTTCAC  423

Query  76   GTTTGAGGAATGTCAGAGCATTGCCCAAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGA  135
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  424  GCTTGAGGAATGTCAGAGCATTGCCCAAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGA  483

Query  136  GATAATGGATGCAAAAGGAGAGAACTCACTAGCATTGTTTCCA-CCTAGGTTTCGTGAGA  194
            |||||||||||||||||||||||||||| |||| ||||||||| || || ||||||||||
Sbjct  484  GATAATGGATGCAAAAGGAGAGAACTCATTAGCTTTGTTTCCAGCCAAG-TTTCGTGAGA  542

Query  195  G  195
            |
Sbjct  543  G  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5