BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932445
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24210.1 | Symbols: TPS10 | terpene synthase 10 | chr2:10294... 658 0.0
> AT2G24210.1 | Symbols: TPS10 | terpene synthase 10 | chr2:10294330-10297530
FORWARD LENGTH=1905
Length=1905
Score = 658 bits (356), Expect = 0.0
Identities = 509/582 (87%), Gaps = 14/582 (2%)
Strand=Plus/Plus
Query 255 CTACATGCCACTGCACTAGAATTCCAACTTTTTAGACAACATGGATTCAATGTTTCTGAA 314
||||||||||| ||||| || |||| |||||| || |||||||| ||||||||||| |||
Sbjct 412 CTACATGCCACCGCACTCGAGTTCCGACTTTTCAGGCAACATGGTTTCAATGTTTCAGAA 471
Query 315 GATGTGTTCGATGTTTTCATGGAAAACTGTGGGAAGTTTGAGAGTAATAATATAAATGAT 374
||||| |||||||||||||||||||| |||||||||||||| || || ||||| ||| |
Sbjct 472 GATGTATTCGATGTTTTCATGGAAAATTGTGGGAAGTTTGACCGTGATGATATATATGGT 531
Query 375 ATCATATCTCTTTACGAAGCATCGTATCTTTCGACAAAGTCGAATACACAA-CTGCAAAA 433
| |||||||||||||||||||| |||||||||||||| | | ||| | || |||||||
Sbjct 532 TTAATATCTCTTTACGAAGCATCATATCTTTCGACAAAATTGGATA-AAAACCTGCAAAT 590
Query 434 ACTCATCAGAACTTTTGCAACACAAAAACTAAGAGACTTTGTTGATACTCATAGTAATGA 493
| |||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 591 ATTCATCAGACCTTTTGCTACACAACAACTCAGAGACTTTGTTGATACTCATAGTAATGA 650
Query 494 AGATTGTGGTGGATCATGTGACACT-GTGGAGATGGTGGTCCAAACGTTAGATATGCCCT 552
||||| | ||| || ||||||| | ||||| || ||||||||| |||| ||||||||||
Sbjct 651 AGATT-T--TGGGTCGTGTGACA-TGGTGGAAATTGTGGTCCAAGCGTTGGATATGCCCT 706
Query 553 ACTATTGGCGAATGAGAAGACT-TGCCACCAGATGGTACATAGATGTGTATAGAAAGAGA 611
||||||||| ||||||||| || | |||||||||||||||||||||||||| |||| |||
Sbjct 707 ACTATTGGCAAATGAGAAGGCTAT-CCACCAGATGGTACATAGATGTGTATGGAAAAAGA 765
Query 612 C---ATAACAAGAACCTTGTCTTAGTTGAATTCGCCAAGATTGATTTCAACATCGTACAA 668
| || | |||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 766 CAAAATTATAAGAACCTTGTCGTCGTTGAATTTGCCAAGATTGATTTCAACATCGTACAA 825
Query 669 GCTATTCATCAAGAAGAACTCAAATACGTTTCCAGCTGGTGGAGGGAGACAGGTTTAGGT 728
|||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 826 GCTATTCATCAAGAGGAACTCAAAAACGTTTCCAGCTGGTGGATGGAGACAGGTTTAGGT 885
Query 729 AATCAACT-TCACTTTGCAAGAGACAGAATAGTGGAGAATTATTTTTGGACTATTGGGCA 787
|| ||||| | |||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 886 AAGCAACTCT-ACTTTGCAAGAGACAGAATAGTGGAGAATTATTTCTGGACGATTGGACA 944
Query 788 TATCCACGAGCCTCAATTTGGTTACGTTCGTCGAATAATGAC 829
||||| |||||||||| || |||||||| | || ||||||
Sbjct 945 AATCCAAGAGCCTCAATACGGATACGTTCGACAAACAATGAC 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42397620068
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5