BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932450
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24240.1 | Symbols: | BTB/POZ domain with WD40/YVTN repeat-... 2109 0.0
> AT2G24240.1 | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like
protein | chr2:10310648-10312328 FORWARD LENGTH=1681
Length=1681
Score = 2109 bits (1142), Expect = 0.0
Identities = 1291/1364 (95%), Gaps = 5/1364 (0%)
Strand=Plus/Plus
Query 4 CACCTAATTTTTCATTGATGGGTATGTCAAAAGATAGGATCAAATTCAACGTTGGTGGAA 63
||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 174 CACCTAATTTTCCATTAATGGGTATCTCAAAAGACAGGATCAAATTCAACGTTGGTGGAC 233
Query 64 GAATTTTCGAAACGACAGCGACGACGTTAGCAAACGCGGGTCGTGATTCTTTCTTCGGAG 123
|| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 234 GACTCTTCGAAACGACGGCGACGACGTTAGCAAACGCAGGTCGTGATTCTTTCTTCGGAG 293
Query 124 CATTGTTCGACGACGAATGGAATCTTTCACCAC---AAGATTCCATTCGTTTCGTAGACA 180
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 294 CATTGTTCGACGACGAATGGAATCTTTCACCACTTGAAGATTCCATTCTTTTCGTAGACA 353
Query 181 GAAACTCAGATTGCTTCGCTGTTCTTCTTGATCTTCTCCGTACCGGAGACCTTAACGTTC 240
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 354 GAAACTCAGATTGCTTCGCAGTTCTTCTTGATCTTCTCCGTACGGGAGACCTTAACGTTC 413
Query 241 CTGCAAACATACCAGAGCGTCTCCTTCATAGAGAAGCTTCTTTCTACGGTTTACTTGACC 300
| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CGGCCAACATCCCTGAGCGTCTCCTTCATAGAGAAGCTTCTTTCTACGGTTTACTTGACC 473
Query 301 ATGTACGGACCGCCAAATGGGGTCCGTTTGATGGTAACCGACTTCGTCTCTCGGATTCCG 360
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 474 ATGTACGGACCGCTAAATGGGGTCCGTTTGATGGTAACCGTCTTCGTCTATCGGATTCTG 533
Query 361 TTAAAGGAATTGCTCCGGGAGACGGAACTGCCATCAGGGCGGGTCCTGATGGCGGTTGTT 420
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 534 TTAAAGGAATTGCTCCCGGAGACGGAACCGCCATCAGGGCAGGTCCTGATGGCGGTTGTT 593
Query 421 GTGTTGCGCATGGGAGTGTTGTTCATGTGTTTGATTGGATGTTGGAAGAACACTCCCCGA 480
| || ||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 594 GCGTCGCGCACGGGAGTGTTGTTCATGTTTTTGATTGGATGTTGGAAGAACATTCTCCGA 653
Query 481 TAAACCTCGATTATCAGAGAGTAAACGATGTTGGCTGGATTGATTCAGACAACATCGTAC 540
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TCAACCTTGATTACCAGAGAGTAAACGATGTTGGCTGGATTGATTCAGACAACATCGTAC 713
Query 541 TCTCTGCTTGCGAGAGGTTAGGG-AGAGGAGAAGGAGGCATGGGACTGTTTAGTTCATCC 599
|||||||||| |||| || ||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 714 TCTCTGCTTGTGAGAAATT-GGGAAGAGGAGATGGAGGAATGGGACTGTTCAGTTCATCT 772
Query 600 TCCGGTGATCTTCGGTATAAGTTTCAGGTCTGTCATGAGAATCAGGTGAAGAGTTATACA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TCCGGTGATCTTCGGTATAAGTTTCAGGTCTGTCATGAGAATCAGGTGAAGAGTTATACA 832
Query 660 GCTGGAGCTTTGAGTTTTTCGCCGGATTATGAGATTTTCGCGAGCTGCAAAGGTCGGAGT 719
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 833 GCTGGAGCTTTGAGTTTTTCGCCGGATTATGAGATTTTTGCGAGCTGCAAAGGTCGGAGT 892
Query 720 AATGAGTACGGAATCGGAGTTTGGGATCAGATAACTGGAAAACAAACAGATTTCTTCTAC 779
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 893 AATGAGTATGGAATCGGAGTTTGGGATCAGATAACTGGAAAGCAAACCGATTTCTTCTAC 952
Query 780 GAGAGTCCTGGTTGGTCACTTGGTGATGCTGATAAGCTTCAATGGTTGAATGGTAAGAAT 839
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 953 GAGAGTCCTGGTTGGTCACTTGGTGATGCTGACAAGCTTCAATGGCTGAATGGTAAGAAC 1012
Query 840 TGTCTTCTTGTAGCTACATTGTTTCCAAGAAAGGATAACTGTTACATTAGCTTGTTGGAT 899
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1013 TGTCTTCTTGTGGCTACATTGTTTCCAAGAAAGGACAACTGTTACATTAGTTTGTTGGAT 1072
Query 900 TTTCGGGACAAGAACATGGTTTGGTCTTGGTCGGATATCGGGTCTCCTATGGCTATAGAC 959
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1073 TTTCGGGACAAGAACATGGTTTGGTCATGGTCGGATATTGGGTCTCCTATGGCGATAGAC 1132
Query 960 GAGAAGAGAGTGAGAGATGCAATAGCTATGGAAGATAGCAATTCGATTTGCGTGGTGAAT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1133 GAGAAGAGAGTGAGAGATGCAATAGCTATGGAAGATAGCAATTCGATTTGTGTGGTGAAT 1192
Query 1020 GAGTTTGAGGATTTGGGGTTTATTGATCTGAGAATGTATGGAGGAAGCGTTAGGTGGAGT 1079
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1193 GAGTTTGAGGATTTGGGGTTTATTGATCTGAGGATGTATGGAGGAAGCGTGAGGTGGAGT 1252
Query 1080 TCGAGAAGTAAATTGATGAAGAGTAAGATGCCTGACGAGCCTTGTTACCCGAAACTGGCT 1139
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1253 TCGAGAAGTAAACTGATGAAGAGTAAGATGCCTGATGAGCCTTGTTACCCGAAACTAGCT 1312
Query 1140 TTGCACGAAGGCCAGCTTTTCTCATCGATGAATGATTCTATCTCTGTGTTTTGTGGACCA 1199
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1313 TTGCATGAAGGCCAGCTTTTCTCATCAATGAATGATTCTATCTCTGTGTTCTGTGGACCA 1372
Query 1200 GACTGGGTCTTAACTTCTAGGCTAAGAAGAAGCTATGGTGGCTCAATCTGTGATTTCTCC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GACTGGGTCTTAACTTCTAGGCTAAGAAGAAGCTATGGTGGCTCAATCTGTGATTTCTCC 1432
Query 1260 ATTGGTGGCGATCGCCTTTTCGCATTGCATAGCGAAGAGAATGTGTTTGATGTCTGGGAG 1319
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1433 ATTGGTGGCGACCGCCTTTTTGCATTGCATAGCGAGGAGAATGTGTTTGATGTCTGGGAG 1492
Query 1320 ACTCCGCCTTGTCCGATCATCTGATTCACTTCCTCAATACTCTG 1363
|||||||||||||||||||| | ||||||| ||| |||||||||
Sbjct 1493 ACTCCGCCTTGTCCGATCATATAATTCACTACCTTAATACTCTG 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5