BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932452

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24220.1 | Symbols: ATPUP5, PUP5 | purine permease 5 | chr2:...   381    3e-105


> AT2G24220.1 | Symbols: ATPUP5, PUP5 | purine permease 5 | chr2:10300116-10301787 
FORWARD LENGTH=1258
Length=1258

 Score =  381 bits (206),  Expect = 3e-105
 Identities = 253/275 (92%), Gaps = 5/275 (2%)
 Strand=Plus/Plus

Query  1    AGTGCTGCAGATAATCTTATATGCTTATGAGTTATGACTATGCGTACCTCCCTGCATCGA  60
            ||||||||||| || | | ||||  ||||  ||||| |||||||||||||||||| ||||
Sbjct  419  AGTGCTGCAGACAA-CCT-TATG--TATG-CTTATGCCTATGCGTACCTCCCTGCTTCGA  473

Query  61   CTTCTTCTCTTTTGGCATCTTCGTCGCTTGCCTTCTCTGCTTTGTTTGGCTATCTCATTG  120
            ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  474  CTTCTTCTCTTCTGGCTTCTTCGTCGCTTGCCTTCTCTGCTTTGTTTGGCTATCTCATTG  533

Query  121  TTAAAACCCCGCTGAATGCTTCAGTTATCAACTCCATTGTGATAATAACCGGTGTTATGG  180
            |||||| ||||||||||||||| |||||||||||||| ||| | |||||||||| |||||
Sbjct  534  TTAAAAACCCGCTGAATGCTTCGGTTATCAACTCCATCGTGGTTATAACCGGTGCTATGG  593

Query  181  CTATAATAGCACTGGATTCAAGCTCTGATCGGTACAGTTATATAAGCAACAGCCAATATT  240
            |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  594  CTATAATAGCGCTGGATTCAAGCTCTGATCGGTACAGTTATATAAGCAACAGTCAATACT  653

Query  241  TTGCAGGTTCCTTTTGGGACATAATGGGATCTGCG  275
            ||||||||| |||||||||||||||||||||||||
Sbjct  654  TTGCAGGTTTCTTTTGGGACATAATGGGATCTGCG  688



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17995854142


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5