BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932456
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1005 0.0
> AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174);
BEST Arabidopsis thaliana protein match is: Protein of
unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast
hits to 121 proteins in 7 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353
REVERSE LENGTH=1511
Length=1511
Score = 1005 bits (544), Expect = 0.0
Identities = 750/844 (89%), Gaps = 35/844 (4%)
Strand=Plus/Plus
Query 75 TTGTACATGCTCGCTCTGTTTGCAGCTTGTGGCGATCCACACTTCCTCTGTCTCCCGTAT 134
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| | |
Sbjct 286 TTGTTCATGCTCGCTCTGTTTGCAGCTTGTGGCGATCCACATTTCCTTTGTCTCCCTTGT 345
Query 135 TACGCCCAAGTTACTCTCTTCCCGCATTCGGCGACTTCCCTTTAGAAAGC--AAAGA-GT 191
||||||||||||||||||||||| | ||| ||| ||||||| ||||||| ||| | ||
Sbjct 346 TACGCCCAAGTTACTCTCTTCCCTCGTTCAACGAATTCCCTTCAGAAAGCAAAAACATGT 405
Query 192 ----CC-C----A-----A-CTCCTGCTATTGCTGATGATCAGCTTTCCGATGCTCTTCA 236
|| | | | |||||| |||||||||||||||||||||||||||||||||
Sbjct 406 GCACCCTCGAGAAGGTCCATCTCCTGATATTGCTGATGATCAGCTTTCCGATGCTCTTCA 465
Query 237 ATGTTTAGTGAAAGTGAAGATCCCAGCATCTGTTCCAAAAAAGATCATCCCTTTGGGCCA 296
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 466 ATGTTTAGTGAACGTGAAGATCCCAGCATCTATTCCAAAAAAGATCATCCCTTTGGGCCA 525
Query 297 TAAGTACAGAATGATCGGTTGGGAATATAATCGTGTGGCCTTTCTTCGGTTAGACAAGGA 356
||||||||||||||||||||||||||||||||| | | | ||||||||| ||||||||||
Sbjct 526 TAAGTACAGAATGATCGGTTGGGAATATAATCGCGCGACTTTTCTTCGGCTAGACAAGGA 585
Query 357 GGGTAA-AAGAGGAGAATTTGTTGTGCTTCTCAAA-TACTCTTTCGGTTTGCTGGTGTTA 414
||| || ||||||||||||||||||||||||| || | |||| | |||||||||||||
Sbjct 586 GGG-AAGAAGAGGAGAATTTGTTGTGCTTCTCGAAGT-CTCTGACACTTTGCTGGTGTTA 643
Query 415 AAAAGTGCTGAAATGAGGTGGAAGCAGCTTGAGAACGTCCCAAATGCTAGATGCTTTGAT 474
| |||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||
Sbjct 644 ACAAGTGCTGAAATGAGGTGGAAGCAGCTTGAGAACGTCCCATATACTATATGCGTTGAT 703
Query 475 ATAGTCACTTTTAGAGGCAGATTTTATGCACATTTTCTTTCAGGA-AAATTTTTCGTTAT 533
||||||||||||||||||||||||||||||| ||||||||||||| |||| | ||||||
Sbjct 704 ATAGTCACTTTTAGAGGCAGATTTTATGCACTTTTTCTTTCAGGACAAATCGT-CGTTAT 762
Query 534 CGATCCTTATTCACTGGAGGTGACTCTCCTATTGCCCTCACCTCAGGAGTCTGAGCGAGG 593
|||||||||||| |||||||||||||| || ||| ||||||||||||| | | ||||
Sbjct 763 CGATCCTTATTCGCTGGAGGTGACTCTTCTGTTGTCCTCACCTCAGGACCC-G--CGAGA 819
Query 594 ATTACAGTCTCTGGTTCCATATGGCAAAGATGAACTTTTCCTGGTTGAGGTAATTATCCC 653
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 820 ATTACGGTCTCTGGTTCCATATGGCAAAGATGAACTTTTCCTGGTTGAGGTAATCATCCC 879
Query 654 AGAA-GATCGT-GTAATAGACTTGAGTCGGTTAACCCGTATAGTGAGGAGGCTAGATGAG 711
| || ||| || ||||||||||| ||||||||| | |||| |||||||||| ||||||||
Sbjct 880 A-AATGAT-GTTGTAATAGACTTTAGTCGGTTAGCTCGTAGAGTGAGGAGGGTAGATGAG 937
Query 712 GAGGCTGGTAAATGGGTTGAGGTCAGTGATTTGGGAGACTGTGTATTGTTGCTTGGAAAT 771
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 938 AAGGCTGGTAAATGGGTTGAGGTCGGTGATTTGGGAGACTGTGTATTGTTACTTGGAAAT 997
Query 772 CTCTCTTGCTCAGCTAAGGAATTTCCTCATGGTTTTGGTTTGAC-GAAGAACGCAGTTTT 830
||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 998 CTCTCTTGCTCGGCTAAGGAATTTCCTCGGGGTTTTGGTTTGACTGA-GAACGCAGTTTT 1056
Query 831 GTTCACCGATAAGTCAGGCCATGCATTTTTATACTATAAAAGAAA-TGTGGTAAAAGATC 889
|||| |||| |||||||| |||||||||||||||||||| ||| || |||||||||||
Sbjct 1057 GTTCGGCGATCAGTCAGGCAATGCATTTTTATACTATAAAC-AAAGTGCGGTAAAAGATC 1115
Query 890 TCAA 893
||||
Sbjct 1116 TCAA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5