BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932458
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01345.1 | Symbols: | Expressed protein | chr3:129138-13074... 1062 0.0
AT5G28919.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 348 1e-94
AT2G06845.1 | Symbols: | Beta-galactosidase related protein | ... 150 4e-35
AT5G35760.1 | Symbols: | Beta-galactosidase related protein | ... 124 2e-27
> AT3G01345.1 | Symbols: | Expressed protein | chr3:129138-130749
FORWARD LENGTH=1612
Length=1612
Score = 1062 bits (575), Expect = 0.0
Identities = 974/1160 (84%), Gaps = 54/1160 (5%)
Strand=Plus/Plus
Query 58 CTAGTTCTCCTCTTAACCTT-TTCGCGATTCT-CGTGGATGATCCCTCTTCTCGGCTCTC 115
|||||||||| ||| | ||| || |||| || ||||| | |||||||| |||||||| |
Sbjct 261 CTAGTTCTCCCCTT-ATCTTCTTTGCGA-CCTCCGTGGTTTATCCCTCTCCTCGGCTCCC 318
Query 116 CTTGAAGTCAAGATCAGCATCTCCTTGTTCCTCGATGGATGGGAGCTCTGCCTCGACGCC 175
||||||||||| | | |||||||| | |||| | ||||| |||||| ||| | ||||||
Sbjct 319 CTTGAAGTCAATACCGGCATCTCCCTATTCCCCTCTGGATCGGAGCTTTGCTTTGACGCC 378
Query 176 GGAGCTGTGGAAGCATC-AAACCATGGGCGAAT-CAACTTCTGCAGACCGAGCTTCAT-- 231
|||||||| |||| | | ||| ||| | || ||||||||||||||||||| ||||
Sbjct 379 GGAGCTGTTGAAG-AGCTTTACCTTGGAAG-ATCCAACTTCTGCAGACCGAGCCTCATCG 436
Query 232 CATCCGCATCTTTTGATTGGGTAGATCTTGTCT-TAGAAGCCCCCAAATCGGTTGCGGGA 290
|| | | | || | |||| |||||||||||| | || |||| ||| |||| || | |
Sbjct 437 CAAAC-AAAC-TTCGTTTGGTTAGATCTTGTCTCT-GACGCCCTCAATTCGGCAGCTGTA 493
Query 291 CAGCCC-AAATCCGTTCTGCCGCCGCCG-C-T-TTTGGTGAGGATGAGAAGAAGAACCT- 345
| ||| || |||||| ||||| ||||| | | ||||||| | ||||||| | | |
Sbjct 494 -AACCCTAAGTCCGTTTTGCCGTCGCCGTCGTCGTTGGTGACAAAGAGAAGATGCGCTTG 552
Query 346 G-GG-TAAACCTAATGGTGCCTC---G--TT----TTGGGCCTAGCCCAAGTCCCTTTTG 394
| || ||||||||||| |||||| | || ||||||| | |||||| ||||| ||
Sbjct 553 GCGGCTAAACCTAATGCTGCCTCAGGGTTTTCGCATTGGGCCCAACCCAAGCCCCTTCTG 612
Query 395 TCCTCCTTCC-AGCCCATTACCCAAACT-TTCGAAGCCCATGAAGACTTCCGCTGGGTTA 452
|||||| || | ||||||||| ||||| || |||||||||||| |||| |||||||||
Sbjct 613 TCCTCC-CCCTAACCCATTACCTAAACTATT-AAAGCCCATGAAGCCTTCTGCTGGGTTA 670
Query 453 AGCCCATGTCTTCTAAGGCCCAGGTCTGATTTT-AATTCTGTTTTACAAAGCCCAAATTT 511
||||||| || ||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 671 AGCCCATATCCTCTAAGGCCCAGGTCTG-TTTTCAAATCTGTTTTACAAAGCCCAAATTT 729
Query 512 TCTGAAGTTGTTATCGTTTAGGGAGAGTAATGAACGCTTTCCTGTGATGGTGATGATGGA 571
| ||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 730 TTTGATGTTGTTATCATTTAGGGAGAGTAATGGACGCTTTCCTGTGATGGTGATGATGGA 789
Query 572 TTTAGCTTGGATTAGTAGTTCTCTTTCCCAAAACCTGGTCGATAGTTTATCTCGTTTGGT 631
|||||||||||||||||| ||||| || |||||||| || |||||| |||||||||||||
Sbjct 790 TTTAGCTTGGATTAGTAGCTCTCTCTCACAAAACCTAGTTGATAGTCTATCTCGTTTGGT 849
Query 632 CCGTTTGCTTCA-TCGTTTGAGTCTGGTCTTGATTCGTTTGGAGTTAATTTCTCTTTGGA 690
|||||| ||||| | |||||||||| ||||||| |||||||||| || ||||||||||||
Sbjct 850 CCGTTTTCTTCAGT-GTTTGAGTCTAGTCTTGAATCGTTTGGAGCTATTTTCTCTTTGGA 908
Query 691 AGTGTCCTAGAGTGTTGCTTCCCGTGCCAAGTATTATTAATTTCCTATCAAGTTCCCTCC 750
||||||||||||||||||| ||| |||||||| ||||||| ||||| ||||||||||
Sbjct 909 AGTGTCCTAGAGTGTTGCTGCCCACACCAAGTATCGTTAATTTACTATCGAGTTCCCTCC 968
Query 751 CTTTAGCACCCTCTAACTCTGTCTTGG-CTGGTAATGGACGCCACGCTAACAGAGTAATG 809
|||||||||||||| |||||| |||| ||||||||||||||| |||| |||| || ||
Sbjct 969 TTTTAGCACCCTCTACCTCTGT-TTGGGCTGGTAATGGACGCCTTGCTATCAGAATAGTG 1027
Query 810 GTTTGTTTGGGCTGGCT-TGATAGTTACCTTTGTCGAGATCAGATGCTAAGTTTACTTTG 868
|||||||| || ||| || |||||||| |||||||||| ||||| ||||||| |||||
Sbjct 1028 GTTTGTTTAGG-TGGGAATGGTAGTTACCATTGTCGAGATAAGATGTTAAGTTTTCTTTG 1086
Query 869 GACTCTATCCAAGACTCTCTT-ACCCAACCATAGGCAATTGGCCTTTAGAGTTAAGAAGA 927
||| |||||| |||||| ||| ||||| |||||||||| |||||||||||||||||| ||
Sbjct 1087 GACCCTATCCGAGACTC-CTTTACCCACCCATAGGCAAATGGCCTTTAGAGTTAAGAGGA 1145
Query 928 CCGGCATTATGACCCTGTCTCTACGGAGTAGGTGTTACCGAAGCTTTTTCAACTCTCTAC 987
||||||||||||||||||||||| ||||||||||||||||||| || ||||||| ||
Sbjct 1146 TCGGCATTATGACCCTGTCTCTACCGAGTAGGTGTTACCGAAGCCTTGAAAACTCTCAAC 1205
Query 988 CTACCCATTCACCAATTATCGAGTTCAGTCATGT---GTTAATCTATTGCTTGGATAATT 1044
|| ||| |||||| |||||| | ||| |||||| |||||||||||||||||||||||
Sbjct 1206 TTATCCACTCACCATTTATCGCGCTCATTCATGTCATGTTAATCTATTGCTTGGATAATT 1265
Query 1045 TGCAATCTTCTGGT-AGGTTGGAAAAGTACGGCATTATGACCATGTCTTCAAGAGGTGGT 1103
|||||||| || | | |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1266 TGCAATCT-CTTGACATGTTGAAAAAGTACGGCATTATGACCATGTCTTCAAGAAGTGGT 1324
Query 1104 TACCGTCTCTTTT-TCAACCTCGTTAACCCGTCAGCCTCCTCCGCGGAGCACTT-TTCCA 1161
|||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 1325 TACCGTCT-TTTTCTCAACCTCGTTAACCCGTCAGCCTCCTCAACGGAGCACTTCTTC-A 1382
Query 1162 AAAGCTCGGATGCATTGTTT 1181
||||||||||||||||||||
Sbjct 1383 AAAGCTCGGATGCATTGTTT 1402
> AT5G28919.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: Expressed protein (TAIR:AT3G01345.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr5:10940033-10941771 FORWARD LENGTH=1739
Length=1739
Score = 348 bits (188), Expect = 1e-94
Identities = 282/327 (86%), Gaps = 8/327 (2%)
Strand=Plus/Plus
Query 859 GTTTACTTTGGACTCTATCCAAGACT-CTCTTACCCAACCATAGGCAATTGGC-CTTTAG 916
|||| |||||||| || ||| ||||| | |||||||||||||| | ||| || |||||
Sbjct 1225 GTTTCCTTTGGACCCTTTCCGAGACTAGT-TTACCCAACCATAGTC-ATTTGCTTTTTAG 1282
Query 917 AGTTAAGAAG-ACCGGCATTATGACCCTGTCTCTACGGAGTAGGTGTTACCGAAGCTTTT 975
||||||| || ||||||||||||||||| | ||||||||||||||||||||||||| | |
Sbjct 1283 AGTTAAG-AGTACCGGCATTATGACCCTATTTCTACGGAGTAGGTGTTACCGAAGCCTCT 1341
Query 976 TCAACTCTCTACCTACCCATTCACCAATTATCGAGTTCAGTCATGTGTTAATCTATTGCT 1035
|||||||||| |||||||| ||||||||||| || |||||||||| ||||||| |||||
Sbjct 1342 ACAACTCTCTATCTACCCATACACCAATTATCAAGGTCAGTCATGTATTAATCTTTTGCT 1401
Query 1036 TGGATAATTTGCAATCTTCTGGTAGGTTGGAAAAGTACGGCATTATGACCATGTCTTCAA 1095
|||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| |
Sbjct 1402 TGGATAATTTGCAACCTTCTGTTTGTTTGGAAAAGTACGGCATTATGACCATGTCTTTTA 1461
Query 1096 GAGGTGGTTACCGTCTCTTTTTCAACCTCGTTAACCCGTCAGCCTCCTCCGCGGAGCACT 1155
||| |||||||||| || ||||||||||| ||||| || ||||||||| |||||||
Sbjct 1462 GAGTTGGTTACCGTTTCCTTTTCAACCTCACCAACCCAACATCCTCCTCCGTGGAGCACA 1521
Query 1156 TT-TCCAAAAGCTCGGATGCATTGTTT 1181
| || |||||||||||||||||||||
Sbjct 1522 TGATC-AAAAGCTCGGATGCATTGTTT 1547
> AT2G06845.1 | Symbols: | Beta-galactosidase related protein
| chr2:2754666-2756008 FORWARD LENGTH=948
Length=948
Score = 150 bits (81), Expect = 4e-35
Identities = 92/97 (95%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 1086 ATGTCTTCAAGAGGTGGTTACCGTCTCTTTTTCAACCTCGTTAACCCGTCAGCCTCCTCC 1145
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCAAGAGGTGGTTACCGTCTCTTTCTCAACCTCGTTAACCCGTCAGCCTCCTCC 60
Query 1146 GCGGAGCAC-TTTTCCAAAAGCTCGGATGCATTGTTT 1181
| ||||||| ||||| |||||||| ||||||||||||
Sbjct 61 GTGGAGCACCTTTTC-AAAAGCTCAGATGCATTGTTT 96
> AT5G35760.1 | Symbols: | Beta-galactosidase related protein
| chr5:13934108-13934782 FORWARD LENGTH=534
Length=534
Score = 124 bits (67), Expect = 2e-27
Identities = 77/82 (94%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 1195 CCAAAAGGGTGAAGAAGAACGGCATTATGATCCCGTCTCTACGGAGCGGTGGTTACCGAA 1254
||||||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct 5 CCAAAAGAGTGAAGAAGAACGCCATTATGATCCCATCTCCACGGAGCGGTGGTTACCGAA 64
Query 1255 GCTTCTTCAACTCTCTATCTCC 1276
||||||||||||||||| ||||
Sbjct 65 GCTTCTTCAACTCTCTACCTCC 86
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84136113420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5