BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932460

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657385-9...   364    3e-100


> AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657385-9661958 
FORWARD LENGTH=3476
Length=3476

 Score =  364 bits (197),  Expect = 3e-100
 Identities = 239/259 (92%), Gaps = 3/259 (1%)
 Strand=Plus/Plus

Query  129  CCTGAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTATGGTGGTT  185
            ||||||||||| ||||||   ||||||||| ||||||||||||||||||||| |||||| 
Sbjct  92   CCTGAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTA  151

Query  186  AGCTCGTTCCCAGCTCCGGTGACGCCGTCGCCTCCATCTCAGGAGGAAATTCAAACCAGA  245
            ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  152  AGCTCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGA  211

Query  246  AGCAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTTCT  305
            || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct  212  AGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGT  271

Query  306  ATTGGTCAGAGAGATGGTGGTGGGTGCTCTGCGAATCTTGAGCAAGCGTATCGTTCCCTC  365
             ||| ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||
Sbjct  272  GTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTC  331

Query  366  ATATCCGCTTCCAGAGGTT  384
            || ||||||||||||||||
Sbjct  332  ATCTCCGCTTCCAGAGGTT  350


 Score = 99.0 bits (53),  Expect = 3e-20
 Identities = 53/53 (100%), Gaps = 0/53 (0%)
 Strand=Plus/Plus

Query  50   CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT  102
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21967006313


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5