BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932461

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48850.1 | Symbols: EMB1144 | chorismate synthase, putative ...   132    3e-30


> AT1G48850.1 | Symbols: EMB1144 | chorismate synthase, putative 
/ 5-enolpyruvylshikimate-3-phosphate phospholyase, putative 
| chr1:18064905-18068090 REVERSE LENGTH=1694
Length=1694

 Score =  132 bits (71),  Expect = 3e-30
 Identities = 80/84 (95%), Gaps = 2/84 (2%)
 Strand=Plus/Plus

Query  291  AGATCTTCTGCTAGAGACACCATTGGAAGAGTTGCTCCTG-AGCTTTGGC-AAGAAAATT  348
            |||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||||
Sbjct  654  AGATCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGCCAAGAAAATT  713

Query  349  TTGAAGCAATTTGCAGGAACTGAG  372
            ||||||||||||||||||||||||
Sbjct  714  TTGAAGCAATTTGCAGGAACTGAG  737



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18498531632


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5