BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932476
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24360.1 | Symbols: | Protein kinase superfamily protein | ... 2087 0.0
AT4G31170.1 | Symbols: | Protein kinase superfamily protein | ... 1118 0.0
> AT2G24360.1 | Symbols: | Protein kinase superfamily protein
| chr2:10364451-10366902 REVERSE LENGTH=1882
Length=1882
Score = 2087 bits (1130), Expect = 0.0
Identities = 1225/1272 (96%), Gaps = 2/1272 (0%)
Strand=Plus/Plus
Query 2 AATCCTAGATTGGGGGAAGATGCTTGAGGGAGCAAAGTTCAACGTGCTTGCTGTTGGGAA 61
|||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 339 AATCTTAGATT--GGGAAGATGCTAGAAGGAGCAAAGTTCAACGTGCTTGCTGTTGGGAA 396
Query 62 TCATCACAACAACGACAACAATTACTATGCTTTTACGCAGGAGTTTTATCAGAAACTTAA 121
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 397 TCATCACAACAACGACAACAATTACTATGCTTTTACGCAAGAGTTTTATCAAAAACTTAA 456
Query 122 TGAAGGTTCAAACATGTCCATGGAGAGTATGCAGACTAGTAACGCTGGAGGATCTGTCTC 181
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 457 TGAAGGTTCAAACATGTCCATGGAGAGTATGCAGACGAGTAACGCTGGAGGATCTGTCTC 516
Query 182 AATGTCTGTGGATAACAGTAGTGTTGGTTCCAGCGATGCTCTTATTGGCCACCCGGGTTT 241
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 517 AATGTCTGTGGATAACAGTAGCGTTGGTTCCAGCGATGCTCTTATTGGCCACCCGGGTTT 576
Query 242 GAAGCCTGTGCGTCATTACTCACTCTCTGTTGGACAAAGCGTGTTTCGCCCGGGAAGAGT 301
||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 577 GAAGCCTGTACGCCATTACTCACTCTCGGTTGGTCAAAGCGTGTTTCGCCCGGGAAGAGT 636
Query 302 TACCCATGCGTTGAATGATGATGCCTTGGCTCAAGCACTGATGGATACCAGGTATCCAAC 361
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 637 TACCCATGCGTTGAATGATGATGCTTTGGCTCAAGCACTGATGGATACCAGGTATCCAAC 696
Query 362 TGAAGGGCTGGCGAACTATGATGAGTGGACGATTGATCTGAGGAACCTCAACATGGGTCC 421
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 697 TGAAGGGCTGACGAACTATGATGAGTGGACGATTGATCTGAGGAAACTCAACATGGGTCC 756
Query 422 TGCCTTTGCTCAAGGGGCTTTCGGTAAATTGTACAAAGGGACTTACAATGGAGAGGATGT 481
||||||||||||||||||||| |||||||| ||||||||||| ||||| || || |||||
Sbjct 757 TGCCTTTGCTCAAGGGGCTTTTGGTAAATTATACAAAGGGACATACAACGGTGAAGATGT 816
Query 482 AGCGATCAAGATACTGGAGTGGCCAGAGAACAGCCCAGAAAAGGCACAGTTCATGGAACA 541
||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 817 AGCTATCAAAATACTTGAGCGGCCAGAGAACAGCCCAGAAAAGGCACAGTTCATGGAACA 876
Query 542 ACAGTTTCAGCAAGAGGTGTCTATGCTTGCCAATTTGAAGCACCCAAACATCGTGAGGTT 601
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 877 ACAGTTTCAGCAAGAGGTGTCTATGCTTGCTAATTTGAAGCACCCAAACATTGTGAGGTT 936
Query 602 CATTGGTGCGTGCCGCAAGCCAATGGTGTGGTGTATAGTGACTGAATACGCCAAAGGAGG 661
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 CATTGGTGCATGTCGCAAGCCAATGGTGTGGTGTATAGTGACTGAATACGCCAAAGGAGG 996
Query 662 CTCTGTGAGGCAGTTTCTGACAAAGAGACAGAACCGAGCCGTCCCTTTGAAGTTAGCTGT 721
|| |||||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 997 TTCAGTGAGGCAGTTTTTGACTAGGAGACAGAACCGAGCCGTCCCTTTGAAGTTAGCTGT 1056
Query 722 TAAACAGGCTTTAGATGTTGCTAGGGGTATGGCTTATGTCCATGGACGCAACTTCATACA 781
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TAAACAGGCTTTGGATGTTGCTAGGGGTATGGCTTATGTCCATGGACGCAACTTCATACA 1116
Query 782 CAGAGATCTCAAGTCAGATAACCTTCTCATCTCAGCAGATAAGTCCATCAAGATTGCAGA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CAGAGATCTCAAGTCAGATAACCTTCTCATCTCAGCAGATAAGTCCATCAAGATTGCAGA 1176
Query 842 TTTTGGTGTTGCAAGAATTGAAGTTCAAACTGAAGGAATGACACCAGAAACCGGAACTTA 901
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1177 TTTTGGTGTTGCAAGAATTGAAGTTCAAACCGAAGGAATGACACCAGAAACTGGAACTTA 1236
Query 902 CAGATGGATGGCTCCAGAGATGATACAGCATAGAGCCTACAATCAAAAAGTGGATGTCTA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1237 CAGATGGATGGCTCCAGAGATGATACAGCATAGAGCCTACAATCAAAAAGTGGATGTGTA 1296
Query 962 TAGTTTCGGGATCGTGCTGTGGGAGTTAATCACAGGACTGTTACCGTTCCAGAACATGAC 1021
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1297 TAGTTTCGGGATTGTGCTGTGGGAGTTAATCACAGGACTCTTACCGTTCCAGAACATGAC 1356
Query 1022 AGCTGTACAGGCAGCGTTTGCGGTTGTAAACCGAGGAGTGCGTCCAACAGTTCCAAACGA 1081
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1357 AGCTGTACAGGCAGCGTTTGCGGTTGTAAACAGAGGAGTGCGTCCAACAGTCCCAAACGA 1416
Query 1082 TTGTCTCCCGGTGCTGAGTGACATCATGACTAGATGTTGGGATGCTAATCCAGAAGTCCG 1141
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1417 TTGTCTCCCGGTGCTGAGTGACATTATGACTCGATGTTGGGATGCTAATCCAGAAGTCCG 1476
Query 1142 TCCATGTTTTGTGGAGGTTGTGAAGCTGCTTGAAGCTGCGGAAACAGAGATAATGACGAC 1201
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1477 TCCATGTTTTGTGGAGGTTGTGAAGCTGCTTGAAGCTGCAGAAACAGAGATAATGACGAC 1536
Query 1202 AGCGAGAAAAGCCCGTTTCAGATGTTGCTTGAGCCAGCCGATGACGATTGACTAAATAAT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 AGCGAGAAAAGCCCGTTTCAGATGTTGCTTGAGCCAGCCGATGACGATTGACTAAATAAT 1596
Query 1262 CCTCCCCTCAAG 1273
|| |||||||||
Sbjct 1597 CCCCCCCTCAAG 1608
> AT4G31170.1 | Symbols: | Protein kinase superfamily protein
| chr4:15153182-15155703 REVERSE LENGTH=1844
Length=1844
Score = 1118 bits (605), Expect = 0.0
Identities = 1048/1259 (83%), Gaps = 41/1259 (3%)
Strand=Plus/Plus
Query 20 GATGCTTGAGGGA-GCAAAGTTCAACGTGCTTGCTGTTGGGAATCATCACAACAACGACA 78
||||||||| | | |||||||| | ||| |||||| || | |||||||||||||||
Sbjct 288 GATGCTTGA-GAATCCAAAGTTCGATTTGCACGCTGTT-GGCA--ATCACAACAACGACA 343
Query 79 ACAATTACTATGCTTTTACGCAGGAGTTTTATCAGAAA-CT----TAATGAAGGTTCAAA 133
||||||||||||| || || || || |||||||| ||| || || |||||| ||||
Sbjct 344 ACAATTACTATGCCTTCACCCAAGACTTTTATCA-AAAGCTCGGGGAA-GAAGGTACAAA 401
Query 134 CATGTCCATGGAGAGTATGCAGACTAGTAACGCTGGAGGATCTGTCTCAATGTCTGTGGA 193
|||||| | || ||||||||||| ||||| |||||||| ||||| ||||||||||| ||
Sbjct 402 CATGTCTGTTGACAGTATGCAGACAAGTAATGCTGGAGGGTCTGTGTCAATGTCTGTCGA 461
Query 194 TAACAGTAGTGTTGGTTCCAGCGATGCTCTTATTGGCCACCCGGGTTTGAAGCCTGTGCG 253
||||||||| |||||||| || ||||||||||||||||| || |||||||||||| ||||
Sbjct 462 TAACAGTAGCGTTGGTTCGAGTGATGCTCTTATTGGCCATCCTGGTTTGAAGCCTATGCG 521
Query 254 TCAT---TACTCACTCTCTGTTGGACAAAGCGTGTTTCGCCCGGGAAGAGTTACCCATGC 310
||| ||||| ||||| | ||| |||||||| ||||| || |||| |||||| |||||
Sbjct 522 CCATCCCTACTCTCTCTCGGATGGCCAAAGCGTATTTCGGCCAGGAAAAGTTACTCATGC 581
Query 311 -GTTGAATGATGATGCCTTGGCTCAAGCACTGATGGATACCAGGTATCCAACTGAAGGG- 368
|| || ||||||||||| || ||||| ||||||||| | ||||||||| | ||||
Sbjct 582 ACTT-AACGATGATGCCTTAGCACAAGCGTTGATGGATAGTAAGTATCCAACCG-AGGGA 639
Query 369 CTGGCGAACTATGATGAGTGGACGATTGATCTGAGGAACCTCA-ACATGGGTCCTGCCTT 427
|||| ||||||||| |||||||| || ||||||||||| || | | ||||||||||| ||
Sbjct 640 CTGGTGAACTATGAAGAGTGGACAATAGATCTGAGGAAACT-ACATATGGGTCCTGCTTT 698
Query 428 TGCTCAAGGGGCTTTCGGTAAA-TTGTACAAAGGGACTTACAATGGAGAGGATGTAGCGA 486
||||||||||||||| || ||| || |||| |||||||||||| ||||| |||||||| |
Sbjct 699 TGCTCAAGGGGCTTTTGG-AAAGTTATACAGAGGGACTTACAACGGAGAAGATGTAGCCA 757
Query 487 TCAAGATACTGGAGTGGCCAGAGAACAGCCCAGAAAAGGCAC-AGTTCATGGAACAACAG 545
| ||| |||| ||| || |||| | || ||| |||||||||| || | | ||||| |||
Sbjct 758 TTAAGCTACTCGAGAGGTCAGATAGCAACCCTGAAAAGGCACAAG-CCCTCGAACAGCAG 816
Query 546 TTTCAGCAAGAGGTGTCTATGCTTGCCA-ATTTGAAGCACCCAAACATCGTGAGGTTCAT 604
|||||||| || || |||||||||| || ||||||||| || |||||||| ||||| ||
Sbjct 817 TTTCAGCAGGAAGTTTCTATGCTTG-CATTTTTGAAGCATCCTAACATCGTTAGGTTTAT 875
Query 605 TGGTGCGTGCCGCAAGCCAATGGTGTGGTGTATAGTGACTGAATACGCCAAAGGAGGCTC 664
|||||||||| || || ||||||||||| || ||||||||||| || |||||||| ||
Sbjct 876 TGGTGCGTGCATTAAACCGATGGTGTGGTGCATCGTGACTGAATATGCAAAAGGAGGGTC 935
Query 665 TGTGAGGCAGTTTCTGACAAAGAGACAGAACCGAGCCGTCCCTTTGAAGTTAGCTGTTAA 724
||| || ||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct 936 TGTCAGACAGTTTCTGACTAAGAGACAAAACCGAGCTGTGCCTTTGAAGTTAGCTGTTAT 995
Query 725 ACAGGCTTTAGATGTTGCTAGGGGTATGGCTTATGTCCATGGA-CGCAACTTCATACACA 783
||||| || |||||||| |||||||||||||| |||||| || |||||||| ||||||
Sbjct 996 GCAGGCGTTGGATGTTGCCAGGGGTATGGCTTACGTCCAT-GAGCGCAACTTTATACACC 1054
Query 784 GAGATCTCAAGTCAGATAACCTTCTCATCTCAGCAGATAAGTCCATCAAGATTGCAGATT 843
| ||||| |||||||||||||| ||||| ||||| ||| ||||||||||||||| ||||
Sbjct 1055 GGGATCTAAAGTCAGATAACCTCCTCATATCAGCTGATCGGTCCATCAAGATTGCTGATT 1114
Query 844 TTGGTGTTGCAAGAATTGAAGTTCAAACTGAAGGAATGACACCAGAAACCGGAACTTACA 903
|||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 1115 TTGGTGTTGCAAGAATTGAAGTTCAAACCGAAGGGATGACACCAGAGACTGGAACTTACA 1174
Query 904 GATGGATGGCTCCAGAGATGATACAGCATAGAGCCTACAATCAAAAAGTGGATGTCTATA 963
|||||||||| ||||||||||| ||||| ||| |||||| |||||||||||| || ||||
Sbjct 1175 GATGGATGGCACCAGAGATGATCCAGCACAGACCCTACACTCAAAAAGTGGACGTGTATA 1234
Query 964 GTTTCGGGATCGTGCTGTGGGAGTTAATCACAGGACTGTTACCGTTCCAGAACATGACAG 1023
|||| || ||||||||||||||||| || ||||| ||||||||||||||||||||||| |
Sbjct 1235 GTTTTGGAATCGTGCTGTGGGAGTTGATTACAGGTCTGTTACCGTTCCAGAACATGACGG 1294
Query 1024 CTGTACAGGCAGCGTTTGCGGTTGTAAACCGAGGAGTGCGTCCAACAGTTCCAA-ACGAT 1082
| || ||||| || ||||| || || ||| ||||||| ||||||||||| ||| | |||
Sbjct 1295 CGGTTCAGGCTGCATTTGCAGTGGTGAACAGAGGAGTCCGTCCAACAGTCCCAGCA-GAT 1353
Query 1083 TGTCTCCCGGTGCT-GAGTGACATCATGACTA-GATGTTGGGATGCTAATCCAGAAGTCC 1140
||||| || ||||| | | || |||||||| | | || |||||||| | || |||||||
Sbjct 1354 TGTCTTCCTGTGCTTG-GAGAGATCATGAC-ACGTTGCTGGGATGCGGACCCTGAAGTCC 1411
Query 1141 GTCCATGTTTTGTGGAGGTTGTGAAGCTGCTTGAAGCTGCGGAAACAGAGATAATGACGA 1200
|||| ||||||| ||| |||| || || || || || |||||||| |||||||||||||
Sbjct 1412 GTCCTTGTTTTGCAGAGATTGTCAATCTTCTGGAGGCGGCGGAAACTGAGATAATGACGA 1471
Query 1201 CA-GCGAGAAAAGCCCGTTTCAGATGTTGCTTGA-GCCAGCCGATGACGATT-GACTAA 1256
| | ||||||||||||||||||||||||| ||| || | || ||||| | | ||||||
Sbjct 1472 -ATGTGAGAAAAGCCCGTTTCAGATGTTGCATGACGCAA-CCAATGAC-AGTCGACTAA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5