BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932479
Length=499
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24390.1 | Symbols: | AIG2-like (avirulence induced gene) f... 784 0.0
> AT2G24390.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr2:10373731-10374952 FORWARD LENGTH=822
Length=822
Score = 784 bits (424), Expect = 0.0
Identities = 471/494 (95%), Gaps = 2/494 (0%)
Strand=Plus/Plus
Query 4 AAGTCAAGAGGAAGAAGATGAGTGGTACAGTGGCAATGCACAGTGTCTTCGTCTACGGCA 63
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 49 AAGTCAAGAGGAAGAAGATGAGTGGTACAGTGACAATGCACAGTGTCTTCGTCTACGGCA 108
Query 64 GTCTCATGGCGGACGACGTCGTACGTCTCCTCCTCAACCGTATCCCTCAAACCGCTTCCG 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 109 GTCTCATGGCGGACGACGTCGTTCGTCTCCTCCTCAACCGTATCCCTCAAACCGCTTCCG 168
Query 124 CAACCCTCCCTGATTTCCATAGATTCAGCATCAAAGGTCGTGTTTATCCCGCGATTCTAC 183
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 169 CAACCCTCCCTGATTTCCATAGATTCAGCATCAAAGGTCGTGTTTATCCGGCGATTATAC 228
Query 184 CAGCTAAAGCC-GATAAAGTCTCTGGCAAGGTGTTATTTGGAATCACAGATCATGAACTT 242
||||||| | | |||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 229 CAGCTAA-GTCTGATAAAGTCTCTGGAAAGGTGTTATTTGGAATCACAGATGATGAACTT 287
Query 243 AATGTTTTAGATGAGTTTGAAGATATTGAGTATGAAAGAGAGGATGTTCAAGTTTTGTTA 302
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 288 AATGTTTTAGATGAGTTTGAGGATGTTGAGTATGAAAGAGAGAATGTTCAAGTTTTGTTA 347
Query 303 ACAGATAGCTCAGACGAGAAACTGCAAACGAAAACCTATGTTTGGGCTAAGAAAGATGAT 362
|||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 348 ACAGATAGTTCAGACGAGAAACTGCAAACAAAAACCTACGTTTGGGCCAAGAAAGATGAT 407
Query 363 CCTGACCTTTACGGTACATGGGATTTCGAGGAATGGAAGCAACTTCACATGGAAGGTTTC 422
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CCTGACCTATACGGGACATGGGATTTCGAGGAATGGAAGCAACTTCACATGGAAGGTTTC 467
Query 423 TTGAAAATGACTAAAGAATTTGCTGAAGAGTTGAATTTACCGAAATCTGAGATATGATTC 482
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 468 TTGAAGATGACTAAAGAATTTGCTGAAGAGTTGAATTTACCGAAATCCGAGATATGACTC 527
Query 483 GCTGCCACATTCGG 496
|| || ||||||||
Sbjct 528 GCCGCTACATTCGG 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23810985678
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5