BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932484

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20550.1 | Symbols: DDL | SMAD/FHA domain-containing protein...   350    8e-96
  AT2G24410.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   159    1e-38


> AT3G20550.1 | Symbols: DDL | SMAD/FHA domain-containing protein 
 | chr3:7174464-7177942 REVERSE LENGTH=1281
Length=1281

 Score =  350 bits (189),  Expect = 8e-96
 Identities = 305/360 (85%), Gaps = 12/360 (3%)
 Strand=Plus/Plus

Query  38    AGAAAACCCAACG-ACAGATGGAGGAGACTTTATGTTTTAAAAGATGGTGAACCACTGAA  96
             |||||||||| || || |||   ||||||| |||||||| || |||||||||||||||||
Sbjct  673   AGAAAACCCAGCGAAC-GAT---GGAGACTGTATGTTTTTAAGGATGGTGAACCACTGAA  728

Query  97    TGAGCCACTCTGCATTCATTACCAAAGCTGCTACCTCTTTGGACGTGAGAGAAAGATCGC  156
             ||||||||||||| ||||   ||||||||||||||||||||||||||| |||| ||| ||
Sbjct  729   TGAGCCACTCTGCCTTCACCGCCAAAGCTGCTACCTCTTTGGACGTGAAAGAAGGATTGC  788

Query  157   CGACATTCCTACTGATCACCCATCTTGTAGCAAGCAACATGCTGTTATTCAGTACCGCGA  216
             |||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| ||
Sbjct  789   CGACATTCCTACGGATCACCCATCTTGCAGCAAGCAGCATGCTGTCATTCAGTACCGGGA  848

Query  217   GGTGGAAAAAGAGAAACAACCA-GAAACAAAC---AACCAAGTGAGGCCTTACATTATGG  272
               ||||||| ||||||| |  | |  |  |     || ||||||| ||||||||| ||||
Sbjct  849   AATGGAAAAGGAGAAACCAG-ATGGTATGATGGGGAAGCAAGTGAAGCCTTACATAATGG  907

Query  273   ATCTTGGTAGTACCAATAATACTTACATCAACGAAACTCCGATTGAGCCACAACGGTACT  332
             |||||||||||||||| || ||||| ||||| |||| ||| |||||||||||| | || |
Sbjct  908   ATCTTGGTAGTACCAACAAAACTTATATCAATGAAAGTCCCATTGAGCCACAAAGATATT  967

Query  333   ACGAGCTTTTTGAGAAAGATACCATAA-GATTTGGCAACAGAAGCCAAGAGTACGTACTG  391
             | ||||||||||||||||| ||||||| | ||||||||||| |||| |||||||||||||
Sbjct  968   ATGAGCTTTTTGAGAAAGACACCATAAAG-TTTGGCAACAGCAGCCGAGAGTACGTACTG  1026


> AT2G24410.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: SMAD/FHA domain-containing protein  (TAIR:AT3G20550.1); 
Has 194 Blast hits to 194 proteins in 92 species: Archae 
- 0; Bacteria - 0; Metazoa - 118; Fungi - 33; Plants - 30; 
Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | 
chr2:10379159-10379407 REVERSE LENGTH=249
Length=249

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 128/147 (87%), Gaps = 7/147 (5%)
 Strand=Plus/Plus

Query  38   AGAAAACCCAACGACAGATGGAGGAGACTTTAT-GTTTTAAAAGATGGTGAACCACTGAA  96
            ||||||||||| || ||||   |||||||||||  |||| || |||||||||||||||||
Sbjct  109  AGAAAACCCAAAGAAAGAT---GGAGACTTTATCATTTT-AAGGATGGTGAACCACTGAA  164

Query  97   TGAGCCACTCTGCATTCATTACCAAAGCTGCTACCTCTTTGGACGTGAGAGAAAGATCGC  156
             ||| |||| ||||||||||||||||  |||||||||||||||||||||||||||||| |
Sbjct  165  AGAGACACTTTGCATTCATTACCAAATTTGCTACCTCTTTGGACGTGAGAGAAAGATC-C  223

Query  157  CGACATTCCTACTGATCACCCATCTTG  183
             |||||||||||| ||||| ||| |||
Sbjct  224  -GACATTCCTACTAATCACACATTTTG  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20107099600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5