BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932493
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 294 1e-78
AT5G42430.1 | Symbols: | F-box and associated interaction doma... 279 3e-74
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 196 3e-49
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 185 7e-46
AT4G36120.1 | Symbols: | Plant protein of unknown function (DU... 183 2e-45
AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 169 7e-41
AT1G33010.1 | Symbols: | F-box and associated interaction doma... 121 2e-26
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 91.6 2e-17
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 75.0 2e-12
AT3G49450.1 | Symbols: | F-box and associated interaction doma... 52.8 7e-06
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 294 bits (159), Expect = 1e-78
Identities = 411/524 (78%), Gaps = 52/524 (10%)
Strand=Plus/Plus
Query 137 TGATATGTAACCCTAGCACAGGACAATATGTGATTTTAC--CTGAATTAAGAAGTTACCG 194
||||||||||||||| ||| |||||||||| ||| |||| ||| | ||| | || ||
Sbjct 398 TGATATGTAACCCTATCACGGGACAATATGCGATCTTACAACTG-A-TAA-CA-TT-CC- 451
Query 195 AC-AGGCGGGAAGTTTTTTAGGGTTTGATCCCATTGACAAGCAATTCAAGGTATTG-GTC 252
|| || | |||| ||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 452 ACGAGAAGAGAAGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCG-C 510
Query 253 ATG---TCT--TG-T-GT-ATA-TGATGATCATCATATTTTGACACTAGGAA-CTGGAAA 302
||| | | || | || || || || ||| |||||| ||||| || ||| |||| ||
Sbjct 511 ATGAAATATAATGATCGTGGTATTGTTGTTCACCATATTCTGACATTA-GAACCTGGCAA 569
Query 303 AATGAGTTGGAGGAAGATCCAATGTCCCTTAAG-CCATGAGCGTTT-AGGTGAAGCA-AA 359
|||||| ||||| || |||| ||||||||| || |||||| | ||| || |||| | |
Sbjct 570 AATGAGGTGGAGAAAAATCCGATGTCCCTT-AGCCCATGAACCTTTCTGG-GAAG-AGAT 626
Query 360 ATGCTTCAATGGGGCTGTTT-T-TTATTTAGCTAGAA-AAACTGAT-GACTGGTCTTGTG 415
|||| |||||||| | ||| | ||| |||||| ||| ||||||| || |||||| ||
Sbjct 627 ATGCGCCAATGGGG-T-TTTGTATTACTTAGCT-GAACCAACTGATGGA-GGGTCTTATG 682
Query 416 GGATAGT-TTGCTTTGATG-TCAGGTCTGAGAAGTTCATGTTTATAGATGCAAAACACTT 473
|||| | ||||||||||| || |||||||||| |||| ||||| || |||||| |||
Sbjct 683 TGATA-TGTTGCTTTGATGTTC-GGTCTGAGAAATTCAAATTTATTGACGCAAAATGCTT 740
Query 474 TGGTG-TTTCATTACATACACAATTGATAAACTATAAGGGTAAATTAGGTGGGATTAGTT 532
||||| |||| | | || |||||||| || |||||||||||| |||||||||||||||
Sbjct 741 TGGTGATTTC--T-C-TATTCAATTGATCAATTATAAGGGTAAACTAGGTGGGATTAGTT 796
Query 533 TAAAGTATGCT--TGT-GATGGTGGA-TTTCCCCTTGAGTTATGTATGTGGGTTCTAGAG 588
||||||| | || ||||| | | || ||||||| | ||||||||||||||||
Sbjct 797 GGAAGTATGATACCGTCGATGG-AAAGCGTACCGTTGAGTTGTATATGTGGGTTCTAGAG 855
Query 589 GATGTCGAGAAAC-GTAAATGGTTGAAATATGTCTACACTTTGC 631
||||||||||||| | ||||||| ||||| |||||| ||||||
Sbjct 856 GATGTCGAGAAACAG-AAATGGTCCAAATACGTCTACCCTTTGC 898
> AT5G42430.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16971312-16972499 REVERSE LENGTH=1188
Length=1188
Score = 279 bits (151), Expect = 3e-74
Identities = 548/725 (76%), Gaps = 86/725 (12%)
Strand=Plus/Plus
Query 139 ATATGTAACCCTAGCACAGGACAATATGTGATTTTACCTGAA---TT-AAGAAGTTACCG 194
||||||||||||||||| ||||| |||| ||| |||||| || || || | || |
Sbjct 370 ATATGTAACCCTAGCACGGGACATTATGCGATGTTACCTAAATTGTTGTTGACG-TATGG 428
Query 195 ACAGGCGGGAAG-TTTTTTAGGGTTTGATCCCATTGACAAGCAATTCAAGGTATTGGTCA 253
| || || |||| |||||| ||||||||| ||| ||||||||||||||||||| |||
Sbjct 429 AGAGACGAGAAGCTTTTTT-TTGTTTGATCCGGTTGGCAAGCAATTCAAGGTATTGCTCA 487
Query 254 TGTCT-TG-T---GTAT-ATG------ATGATCA-TCATATTTTGACACTAGGAACTGGA 300
|| | | | || ||| | || || ||||||||||||| | |||||| ||
Sbjct 488 TGAATAAGATAAACAATAATGAAACAAAGGA-CATTCATATTTTGACATTGGGAACTAGA 546
Query 301 AAAATGAGTTGGAGGAAGAT-C--CAATGTCCCTTAAGCCATGAGCGTTTAG-GTGAA-G 355
||| |||| ||||||||||| | ||||| ||||| | |||| | |||| | |||| |
Sbjct 547 AAAGTGAGATGGAGGAAGATCCAACAATGCCCCTTGATCCAT-ATTGTTTCGCATGAATG 605
Query 356 CAAAATGCTTCAATGGGGCTGTT-TTTTATTTAGC-TAGAAAAACTGATGACTGGTCTTG 413
| |||| ||||||||||| || | ||| |||| || || | |||||| | |||||
Sbjct 606 -GATATGCATCAATGGGGCT-TTGTATTACATAGCTTA-TAACATTGATGA-T-TTCTTG 660
Query 414 TGGG---ATAGTTTGCTTTGATGTCAGGTCTGAGAAGTTC--ATGTTTATAGATGC-AAA 467
||| ||||||||||||||||||||||| ||||| ||| |||| || | || | |||
Sbjct 661 -GGGTATATAGTTTGCTTTGATGTCAGGTCCGAGAAATTCAAATGTCTA-A-AT-CTAAA 716
Query 468 AC-ACTTTGGTGTTTCAT-TAC-A--TAC-ACAATTGATAAACTATAAGGGTAAATTAGG 521
| | | || |||| | || | ||| | |||||||| ||||||| |||||||||||
Sbjct 717 CCAAGACT-GTTTTTC-TGAACGATCTACTA-AATTGATATACTATAAAGGTAAATTAGG 773
Query 522 TG-GGATTAGTTTAAAGTATGCTTGTGATGGTGGATTTCCCCTTGAGTTATGTATGTGGG 580
|| || ||| ||| ||||||||| || ||||||||||||||| |||||||||||||||
Sbjct 774 TGTGG-TTAATTTGAAGTATGCTCATGGCGGTGGATTTCCCCTTAAGTTATGTATGTGGG 832
Query 581 TTCTAGAGGATGTCGAGAAAC-GTAAATGGTTGAA-ATATGTCTACACTTTGCAGGC-TG 637
||||||||||||| ||||||| | || ||| || || ||| ||||||||| ||| ||
Sbjct 833 TTCTAGAGGATGTGGAGAAACAGGAA-TGGAC-AACATCTGTGTACACTTTG-AGGGATG 889
Query 638 ATAATA-A-TCTAGTTAAGGTTAAAAACAATCTTTTTGTTGTTGGGACGACTGCTACAGG 695
| ||| | || ||||||||| | || |||||||| ||||||||| |||||||||||
Sbjct 890 AGGATAGAGTC--GTTAAGGTTTACTACGATCTTTTTATTGTTGGGATAACTGCTACAGG 947
Query 696 TGAAATTGTTTTGTCGAAGGATAAAGGTAGTATCATCATAAACACTATTAAACCGTTTTA 755
||||||||||||| ||||| | ||||||| | | | | | | ||||||
Sbjct 948 TGAAATTGTTTTGGCGAAGAA-AAAGGTA-TGT-A--AG---C-C---------GTTTTA 989
Query 756 TGTTTTCTACTTCAATC-CTGAAAAGAACACTCTCCTTAGTGTTGAAATCCAAGATTTGG 814
||| |||||||| |||| | |||| |||||||||||| |||||||||||||||| ||| |
Sbjct 990 TGTCTTCTACTTTAATCTC-GAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTTTTG 1048
Query 815 G-GAA 818
| |||
Sbjct 1049 GAGAA 1053
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 196 bits (106), Expect = 3e-49
Identities = 316/411 (77%), Gaps = 40/411 (10%)
Strand=Plus/Plus
Query 418 ATAGTTTGCTTTGATGTCAGGTCTGAGAAGTTCATGTTTATAGATGC-AA-AACACTTTG 475
|||| |||||||||||| ||||||||||| |||| |||| || || | || || |||
Sbjct 457 ATAGGTTGCTTTGATGTTAGGTCTGAGAAATTCAAGTTTTTATAT-CTAAGCCCAGATTG 515
Query 476 GTGTTTC--A-T--TACATACACAATTGATAAACTATAAGGGTAAATTAGGTGGGATTAG 530
| || | | | | | || | |||||||||||||||||||||||||||||| || ||
Sbjct 516 CT-TTCCAAACTGGT-C-TAGAAAATTGATAAACTATAAGGGTAAATTAGGTGTGACTA- 571
Query 531 TTTAAAGTATGCTTGTGATGGTGGATTTCCCCTTGAGTTATGTATGTGGGTTCTAGAGGA 590
| || | | | || | ||||||||||||||||| |||| |||||||||||||||||||
Sbjct 572 T--AATGGAAGATTATCATGGTGGATTTCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGA 629
Query 591 TGTCGAGAAAC-GTAAATGGTTGAAATATGTCTACACTTTGCAGGC-TGATAATAATCTA 648
|||||||||| | || ||| || ||||| |||||||||| |||| ||| ||||| |
Sbjct 630 TGTCGAGAAAGAGGAA-TGGACGAGATATGCCTACACTTTG-AGGCCTGAGAATAA---A 684
Query 649 GTTAAGGTTAAAAACAATCTTTTTGTTGTTGGGACGACTGCTACAGGTGAAATTGTTTTG 708
|| ||| || || || | | |||||||||| | |||||| |||||||||||||||||
Sbjct 685 GTCGAGGACAATGACTATGTATATGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTG 744
Query 709 TCGAAGGATAAAGGTAGTATCATCATAAACACTATTAAACCGTTTTATGTTTTCTACTTC 768
|||| | | | | || |||| || || ||||||||||||||||||||
Sbjct 745 ACGAA--ACA--G--A--ATG--CATA-----TA--AA-CCGTTTTATGTTTTCTACTTT 786
Query 769 AATCCTGAAAAGAACACTCTCCTTAGTGTTGAAATCCAAGAT-TTGGGGAA 818
| |||||||| |||||||||||| || ||||||||||||| | |||| |||
Sbjct 787 AGTCCTGAAAGGAACACTCTCCTAAGCGTTGAAATCCAAGGTGTTGGAGAA 837
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 185 bits (100), Expect = 7e-46
Identities = 289/375 (77%), Gaps = 33/375 (9%)
Strand=Plus/Plus
Query 417 GATAGTTTGC-TTTGATGTCAGGTCTGAGAAGTTC-ATGTTTAT-AGATGCA-AAACACT 472
|||||||| | |||||| | ||||||||||| ||| || ||||| | ||||| || ||
Sbjct 78 GATAGTTT-CTTTTGATTTTAGGTCTGAGAAATTCAAT-TTTATCA-ATGCATCAA-GCT 133
Query 473 TTGGTGTTTCATTACATACACAATTGATAAACTATAAGGGTAAATTAGGTGGGATTAG-T 531
| | ||||| | | |||| ||||||||||||| || |||||||||||||||||| | |
Sbjct 134 TCCTTTTTTCA-T-C-TACAAAATTGATAAACTACAAAGGTAAATTAGGTGGGATT-GAT 189
Query 532 TTAAAGTATGCTTGTGATGGTGGATTTCCCCTTGAGTTATGTATGTGGGTTCTAGAGGAT 591
|| |||| | || ||||| || |||| |||||||| ||||||||||||||||||||
Sbjct 190 TTGGCGTATAATCATGGTGGTGTATATCCCGTTGAGTTACGTATGTGGGTTCTAGAGGAT 249
Query 592 GTCGAGAAACGTAAATGGTTGAAATATGTCTACACTTTGCAGGCTGATAAT--AATCT-A 648
|||||||||| |||||| || | |||| ||| |||||| || || || ||| | |
Sbjct 250 GTCGAGAAACACGAATGGTCGAGACATGTTTACTCTTTGCCGGA-GACCATTGAATTTCA 308
Query 649 GTTAAG-GTTAAAAACAATCTTTTTGTTGTTGGGACGACTGCTACAGGTGAAATTGTTTT 707
| | | || || ||||| ||| |||| ||||| || ||||| |||||||||||||||
Sbjct 309 GC-A-GTGT-AACTACAATATTTGCGTTGGTGGGATGAATGCTATAGGTGAAATTGTTTT 365
Query 708 GTCGAAGGATAAAGGTAGTATCATCATAAACACTATTAAACCGTTTTATGTTTTCTACTT 767
||| || | | || ||| ||| || || | |||||||||||||||||||||||
Sbjct 366 TTCGGAG--TCA---TA-TAT-ATC-TA--CA-TCC-AAACCGTTTTATGTTTTCTACTT 413
Query 768 CAATCCTGAAAAGAA 782
|||||| ||||||||
Sbjct 414 CAATCCCGAAAAGAA 428
> AT4G36120.1 | Symbols: | Plant protein of unknown function (DUF869)
| chr4:17093088-17096573 REVERSE LENGTH=3116
Length=3116
Score = 183 bits (99), Expect = 2e-45
Identities = 131/146 (90%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 1036 CAGCATTTGGAAGGTGTGAAAAAGATTGCAAAACTTGAAGCAGAGTGTCAAAGCCTAAGG 1095
|||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 823 CAGCATCTGGAAGGTGTGAAAAAGATTGCAAAACTTGAAGCAGAGTGTCATAGGCTTAGA 882
Query 1096 GGGCTTCTACGGAAGAAGCTTCCTGGTCCTGCTGCTATGGCTCAGATGAAGCTAGCTAGA 1155
|| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 883 GGACTTCTGCGGAAAAAGCTTCCTGGTCCTGCTGCTATGGCTCAAATGAAGCTAGA-AG- 940
Query 1156 ATTTGAAAGCTTAGGGCATGAATTCA 1181
|| ||| ||||||||||||||||||
Sbjct 941 -TT-GAAGGCTTAGGGCATGAATTCA 964
Score = 174 bits (94), Expect = 1e-42
Identities = 107/113 (95%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 927 TTGGCCATGGAAGAGAAAGTCTTCGGACAAAGCCACGACTGAGAAACCAGTTGTTGGAAA 986
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 TTGGCCATGGAAGAGAAAGTCTTCGGACAAAGCCACGACTGAGAAACCAGTTGTTGGAA- 73
Query 987 T-GAGTCAACTCCTGTTTGTTCTTTGTCCTATTTAGCTTCTCCGGAGAATCAG 1038
| ||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 74 TCGAGTCAACTCCTGTTTGTTCTTTGTCCTACTTGGCTTCTCTTGAGAATCAG 126
> AT1G30921.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11007112-11008238 REVERSE LENGTH=1127
Length=1127
Score = 169 bits (91), Expect = 7e-41
Identities = 248/319 (78%), Gaps = 29/319 (9%)
Strand=Plus/Plus
Query 494 AATTGATAAACTATAAGGGTAAATTAGGTG-GGATT-AGTTTAAAGTATGCTTGTGATGG 551
||||||||||||||||||||||||||||| || || | ||| || | | || |||||
Sbjct 750 AATTGATAAACTATAAGGGTAAATTAGGTTTGG-TTGA-TTTGGAGAAGGATTATGATGC 807
Query 552 TGGATTTCCCCTTGAGTTATGTATGTGGGTTCTAGAGGATGTCGAGAAACGTAAATGGTT 611
||||| || ||||| |||| ||||| |||||||||||||||||||||| | ||| |
Sbjct 808 TGGATATCTCCTTGGGTTACGTATGCAGGTTCTAGAGGATGTCGAGAAAGGGGAATAGAA 867
Query 612 GAAATATGTCTACACTTTGCAGG-CTGATAATAATCTAGT-TAAGGTTAAAAACAATCTT 669
|||||||| ||||||| || ||| ||||| | ||| ||| | |||| |||||||||
Sbjct 868 GAAATATGCCTACACTGTG-AGGGCTGATGAGAATAAAGTCT----TTAACAACAATCTT 922
Query 670 TTTGTTGTTGGGACGACTGCTACAGGTGAAATTGTTTTGTCGAAGGATAAAGGTAGTATC 729
| ||||||||| | |||||| ||||||||||||||||| ||||| | | | |||
Sbjct 923 TCCGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGGCGAAG-A-A----T--TATG 974
Query 730 ATCATAAACACTATTAAACCGTTTTATGTTTTCTACTTCAATCCTGAAAAGAACACTCTC 789
|||| | | | ||||||||||||||||| || ||||| || | ||||||||||
Sbjct 975 --CATAGA-A--A-----CCGTTTTATGTTTTCTAATTTAATCCCGATAGGAACACTCTC 1024
Query 790 CTTAGTGTTGAAATCCAAG 808
| ||||||||||||||||
Sbjct 1025 CGAAGTGTTGAAATCCAAG 1043
> AT1G33010.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11959287-11960591 FORWARD LENGTH=1086
Length=1086
Score = 121 bits (65), Expect = 2e-26
Identities = 118/142 (83%), Gaps = 10/142 (7%)
Strand=Plus/Plus
Query 492 ACAATTGATAAACTATAAGGGTAAATTAGGTGGGATTAGTTTAAAGTA-TGCTTGTGATG 550
||||||||||||||||||||||||||||||||||||||||| || || | | || | |
Sbjct 537 ACAATTGATAAACTATAAGGGTAAATTAGGTGGGATTAGTTGGAA-TAAT-CATG--A-G 591
Query 551 GTGGATTTCCCCTTGAGTTATGTATGTGGGTTCTAGAGGATGTCGAGAAACGTA-AATGG 609
|| | | ||| ||||||| | ||||||||||||||| ||||||||||||| | |||||
Sbjct 592 GTTGCT--CCCGTTGAGTTGTCTATGTGGGTTCTAGAAGATGTCGAGAAACA-AGAATGG 648
Query 610 TTGAAATATGTCTACACTTTGC 631
| ||| ||||||||| |||||
Sbjct 649 TCCAAAAATGTCTACATTTTGC 670
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 91.6 bits (49), Expect = 2e-17
Identities = 67/75 (89%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 746 AACCGTTTTATGTTTTCTACTTCAATCCTGAAAAGAACACTCTCCTTA-GTGTTGAAATC 804
|||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||
Sbjct 1212 AACCGTTTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCA-ACGTGTTGAAATC 1270
Query 805 CAAGATTTGGG-GAA 818
|||| ||| || |||
Sbjct 1271 CAAGGTTTTGGTGAA 1285
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 75.0 bits (40), Expect = 2e-12
Identities = 64/75 (85%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 746 AACCGTTTTATGTTTTCTACTTCAATCCTGAAAAGAACACTCTCCTTA-GTGTTGAAATC 804
|||||||||||||||||||||||||||| ||| ||||||||||| | |||| |||| |
Sbjct 1019 AACCGTTTTATGTTTTCTACTTCAATCCCGAATCGAACACTCTCCA-ACGTGTAGAAACC 1077
Query 805 CAAGATTTGGG-GAA 818
|||| ||| || |||
Sbjct 1078 CAAGGTTTTGGTGAA 1092
> AT3G49450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18337305-18338498 REVERSE LENGTH=1194
Length=1194
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 136 ATGATATGTAACCCTAGCACAGGACAAT 163
||||||||||||||||||||||||||||
Sbjct 451 ATGATATGTAACCCTAGCACAGGACAAT 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57981629475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5