BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932494
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 172 4e-42
AT5G38810.1 | Symbols: | F-box and associated interaction doma... 134 2e-30
AT3G56890.1 | Symbols: | F-box associated ubiquitination effec... 115 8e-25
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 104 2e-21
AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9... 99.0 8e-20
AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-84... 93.5 4e-18
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 89.8 5e-17
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 172 bits (93), Expect = 4e-42
Identities = 339/449 (76%), Gaps = 52/449 (12%)
Strand=Plus/Plus
Query 219 GAAGGAG-TATGCTTCAATGGGGTTGTT-TTTTACT-TAGCTAAAAAAGCTGATGACGGG 275
||| ||| ||||| ||||||||||| || | ||||| | |||| |||| || ||
Sbjct 14 GAAAGAGATATGCATCAATGGGGTT-TTGTATTACTCTGGCTAGTTCAGCTCAT---GGA 69
Query 276 TCT-TATGTGATAGTTTGC-TTTGATATTAGGTCTGAGAAATTC-ATGTTTATAGAA-GC 331
| | | | ||||||||| | |||||| ||||||||||||||||| || ||||| || ||
Sbjct 70 TATCT-TCTGATAGTTT-CTTTTGATTTTAGGTCTGAGAAATTCAAT-TTTAT-CAATGC 125
Query 332 A--AAAC--ACTTTTGTGATACATCAAATGCACATTTGATAAACTACAAGGGTAAATTAG 387
| || | ||||| | | |||| | || | |||||||||||||| ||||||||||
Sbjct 126 ATCAAGCTTCCTTTT-T--T-CATC---TACAAAATTGATAAACTACAAAGGTAAATTAG 178
Query 388 GTGGGATTAG-TTTAAAGTATGCTTGTGATGGTGGATTTCCCCTTGAGTTATC-TATGTG 445
|||||||| | ||| |||| | || ||||| || |||| |||||||| | ||||||
Sbjct 179 GTGGGATT-GATTTGGCGTATAATCATGGTGGTGTATATCCCGTTGAGTTA-CGTATGTG 236
Query 446 GGTTCTAGAGGATGTTGAGAAACATGAATGGTCTAAATACGTCTACACTTTGCGGGCTGA 505
||||||||||||||| |||||||| |||||||| | | | || ||| |||||| || ||
Sbjct 237 GGTTCTAGAGGATGTCGAGAAACACGAATGGTCGAGACATGTTTACTCTTTGCCGG-AGA 295
Query 506 -GAATAAAGTCGTTAAG--GT-TAAGAATAATCTTT-CTGTTGTTGGGACGACTGCTAGA 560
| | || | || || || ||| | ||| ||| | |||| ||||| || ||||| |
Sbjct 296 CCATTGAA-T--TTCAGCAGTGTAACTACAATATTTGC-GTTGGTGGGATGAATGCTATA 351
Query 561 GGTGAAATTGTTTTGTCGAAGAATAAAAGTAATATCATCATAGACACTATTAAACCGTTT 620
|||||||||||||| ||| || | | | |||| ||| | ||| | |||||||||
Sbjct 352 GGTGAAATTGTTTTTTCG--GAGT--CA-T-ATAT-ATC-T--ACA-T-CCAAACCGTTT 399
Query 621 TATGTTTTCTACTTCAATCCCGAAAAGAA 649
|||||||||||||||||||||||||||||
Sbjct 400 TATGTTTTCTACTTCAATCCCGAAAAGAA 428
> AT5G38810.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:15540484-15541540 REVERSE LENGTH=780
Length=780
Score = 134 bits (72), Expect = 2e-30
Identities = 251/332 (76%), Gaps = 33/332 (10%)
Strand=Plus/Plus
Query 159 GGAACTGGAAAA-ATG-AGTTGGAGGAAGATCCA-ATGTGCCTTAACCCAT-AA--TCGT 212
|||||| ||||| || || ||||||||||| | |||| ||||||||||| || | |
Sbjct 319 GGAACT-GAAAATTTGAAG-TGGAGGAAGAT-GATATGTCCCTTAACCCATGAACCTTAT 375
Query 213 TGTGGTGA-AGGAGTATGCTTCAATGGGGTTGTT-TTTTACTTAGCTAAAAAAGCTGATG 270
| |||| | || ||| | ||||||||||| || | |||||| ||| | | | ||
Sbjct 376 TATGGT-AGAGCCTTATCCATCAATGGGGTT-TTGTATTACTTTGCT--AGGA-C--AT- 427
Query 271 ACGGGTCTTATGTGA-TAGTTTGCTTTGATATTAGGTCTGAGAAATTCATGTTTATAGAA 329
|| || || | | | |||||| |||| || |||||||||||||||||| |||| | ||
Sbjct 428 -CGTGT-TT-TCT-AGTAGTTTCCTTTAATGTTAGGTCTGAGAAATTCAAGTTTCTTGAT 483
Query 330 GCAAAACACTTTTGTGA--TACATCAAATGCACATTTGATAAACTACAAGGGTAAATTAG 387
| |||| |||| | | | | ||| | | | | |||| ||||||||||||||||||||||
Sbjct 484 GGAAAAGACTTCTCTAATTTTCAT-AGA-G-A-ATTT-ATAAACTACAAGGGTAAATTAG 538
Query 388 GTGGGATTAGTTTAAAGTATGCTTG-TGATGGTGGATTTCCCCTTGAGTTATCTATGTGG 446
||| || || || ||| || || || || |||| ||||| |||||| | | |||||
Sbjct 539 GTGTGACTAAATTGGAGTGTG-ATGCTGGTGATGGACATCCCCGTGAGTTGTGTGTGTGG 597
Query 447 GTTCTAGAGGATGTTGAGAAACATGAATGGTC 478
||||||||||||||||||||||| ||||||||
Sbjct 598 GTTCTAGAGGATGTTGAGAAACAGGAATGGTC 629
> AT3G56890.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:21062990-21063717 REVERSE LENGTH=660
Length=660
Score = 115 bits (62), Expect = 8e-25
Identities = 301/408 (74%), Gaps = 49/408 (12%)
Strand=Plus/Plus
Query 362 TTTGATAAACTACAAGGGTAAATTAGGTGGGA-TTAGTTTAAAGTATGCTTG-TGATGGT 419
|||| | ||||| | ||||||||||| || || | || | || |||| ||| | ||||
Sbjct 189 TTTGGTCAACTATATGGGTAAATTAGCTGTGACTAAG-TGCAACTATG-TTGACGTTGGT 246
Query 420 -G--GA-TTTCCCCTTGAGTTATCTATGTGGGTTCTAGAGGATGTTGAGAAACATGAATG 475
| || || || ||||||| | | |||||||||||||||||||||||||||| |||||
Sbjct 247 GGAAGACGTT-CCGTTGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATG 305
Query 476 G-TCTAAATACGTCTACACTTTGCGGGCTGAGAATAAAGTCGTTAAGGTTAA-GAATAAT 533
| || || || ||||||||||| | || ||||| ||||| || |||| | | |
Sbjct 306 GGTC-AAGTATGTCTACACTTTACCGG---AGAATGAAGTCCTT--GGTTCCTGCG-AGT 358
Query 534 CTTTCTGTTGTTGG-GACGACTGCTAGAGGTGAAATTGTTTTGTCGAAGAATAAAAGTAA 592
|||| |||| ||| | |||||| ||||| || |||||||||| | | | || |||
Sbjct 359 -TTTCAGTTGCTGGAGT-GACTGCAAGAGGCGATATTGTTTTGT-GTA---TGAA-GTA- 410
Query 593 TATCATCATAGACACTATTAAACCGTTTTATGTTTTCTACTTCAATCCCGAAAAGAACAC 652
|| ||| | || || |||| ||||| ||||||||| ||||||||||||| ||
Sbjct 411 TA-CAT----G----TA--AA-CCGTACTATGTATTCTACTTCGATCCCGAAAAGAAAAC 458
Query 653 TCTACTAAGTGTTGAAATCCAAGATTTTGGAG--AACGCCATGAAT-GGTTTATGGGTCA 709
|| | ||||||||||||||||| |||||||| || || |||| |||| | | ||
Sbjct 459 CCTCCAAAGTGTTGAAATCCAAGGTTTTGGAGCTAA-GCT-TGAAGAGGTTGA-GCATCG 515
Query 710 TA---AAGTTTACGCTTTTGTAGACCATGTTGAGGATCTTAAGTTTAA 754
| ||||||| || ||||| ||| ||||||||||||||| || |||
Sbjct 516 TGGTGAAGTTTATGCCTTTGTTGACTATGTTGAGGATCTTA-GTCTAA 562
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 104 bits (56), Expect = 2e-21
Identities = 69/75 (92%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 613 AACCGTTTTATGTTTTCTACTTCAATCCCGAAAAGAACACTCTACTAA-GTGTTGAAATC 671
||||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||
Sbjct 1212 AACCGTTTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCC-AACGTGTTGAAATC 1270
Query 672 CAAGATTTTGGAGAA 686
|||| |||||| |||
Sbjct 1271 CAAGGTTTTGGTGAA 1285
Score = 84.2 bits (45), Expect = 2e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 278 TTATGTGATAGTTTGCTTTGATATTAGGTCTGAGAAATTCATGTTTAT 325
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 859 TTATGTGATAGTTTGCTTTGATATTAGGTCTGAGAAATTCACGTTTAT 906
> AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9863744
FORWARD LENGTH=1275
Length=1275
Score = 99.0 bits (53), Expect = 8e-20
Identities = 68/75 (91%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 613 AACCGTTTTATGTTTTCTACTTCAATCCCGAAAAGAACACTCTACTAA-GTGTTGAAATC 671
|||| ||||||||||||||||||||||||||||||| |||||| | || |||||||||||
Sbjct 1043 AACCATTTTATGTTTTCTACTTCAATCCCGAAAAGAGCACTCTCC-AACGTGTTGAAATC 1101
Query 672 CAAGATTTTGGAGAA 686
|||| |||||| |||
Sbjct 1102 CAAGGTTTTGGTGAA 1116
> AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-846616
REVERSE LENGTH=1596
Length=1596
Score = 93.5 bits (50), Expect = 4e-18
Identities = 67/75 (89%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 613 AACCGTTTTATGTTTTCTACTTCAATCCCGAAAAGAACACTCTACTAA-GTGTTGAAATC 671
|||| |||||||||||||||||||||||||||| ||| ||||| | || |||||||||||
Sbjct 1421 AACCATTTTATGTTTTCTACTTCAATCCCGAAAGGAATACTCTCC-AACGTGTTGAAATC 1479
Query 672 CAAGATTTTGGAGAA 686
|||| |||||| |||
Sbjct 1480 CAAGGTTTTGGTGAA 1494
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 89.8 bits (48), Expect = 5e-17
Identities = 188/250 (75%), Gaps = 31/250 (12%)
Strand=Plus/Plus
Query 442 TGTGGGTTCTAGAGGATGTTGAGAAACATGAATGGTCTAAATACGTCTACACTTTGCGGG 501
|||||||||||||||||||||||||||| |||||||||||||| | |||||| || ||
Sbjct 869 TGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCTAAATATGCCTACAC-TT--GGA 925
Query 502 CTGA-GAATAAAGTCGTTAAGGTTAAGAATAATCTTTCTGTTGTTGGGA-CGACTG-CTA 558
| || | ||| | || || | | | | | ||||| ||| | ||| | |||| |
Sbjct 926 CCGATG-ATACATTC-TT-CCG-T-CG--TCACCTTTCCATTGCT-GGAGCCACTGTTTC 977
Query 559 GAGGTGAAATTGT-TTTGTCGAAGAATAAAAGTAATATCATCATAGACACTATTAAACCG 617
| |||||||| || ||| ||| | | |||| | | |||| || | || |||||
Sbjct 978 G-GGTGAAATAGTGTTT-TCG-A-TACGCAAGT-ACA-CATC-TA-A-AC-----AACCG 1023
Query 618 TTTTATGTTTTCTACTTCAATCCCGAAAAGAACACTCTACTAA-GTGTTGAAATCCAAGA 676
||||||||||||||||||||||||||| ||||||||| | || |||| |||| |||||
Sbjct 1024 TTTTATGTTTTCTACTTCAATCCCGAATCGAACACTCTCC-AACGTGTAGAAACCCAAGG 1082
Query 677 TTTTGGAGAA 686
|||||| |||
Sbjct 1083 TTTTGGTGAA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5