BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932496
Length=227
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24460.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 154 3e-37
> AT2G24460.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Zinc finger, C3HC4 type (RING finger) family protein
(TAIR:AT2G24480.1); Has 32 Blast hits to 32 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:10394329-10395390 FORWARD LENGTH=1062
Length=1062
Score = 154 bits (83), Expect = 3e-37
Identities = 163/197 (83%), Gaps = 24/197 (12%)
Strand=Plus/Plus
Query 1 TGTCTAATTTCACT-C---CGA-GTATGGAAACTGACTCAACCAAACTCGATGTTCAAGT 55
|||||||||||||| | ||| | ||||||||||| |||| ||||||||||||||||||
Sbjct 159 TGTCTAATTTCACTACGATCGACG-ATGGAAACTGAATCAATCAAACTCGATGTTCAAGT 217
Query 56 AGATGTAGCGGCTACGTCTCAAGATCCGTCGTTAGGGTTCTTAAGCACGGTAATAATCAC 115
| | || |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 218 --A---A-CGACTACGTCTCAAGATCCGTCGTTAGGGTTGTTAAGCACGGTAATAATCAC 271
Query 116 TCTAGACAGAGAG-T--AC---T-TGAAG-GA-TG---ATAGCATCAAGAGTCTAGGATC 163
||| |||||||| | | | ||| | || || ||||||||||||| || |||||
Sbjct 272 TCTTGACAGAGATCTGGAGGAATATGACGAGAATGTTGATAGCATCAAGAGCCTCGGATC 331
Query 164 TTACCCTGATTCTTCTA 180
|||||||||||||||||
Sbjct 332 TTACCCTGATTCTTCTA 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10204353047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5