BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932498
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28620.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 701 0.0
AT2G24480.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 699 0.0
AT5G43200.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 667 0.0
AT4G14149.1 | Symbols: | Pseudogene of AT2G24480; zinc finger ... 351 3e-96
> AT3G28620.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr3:10727826-10728461 FORWARD LENGTH=636
Length=636
Score = 701 bits (379), Expect = 0.0
Identities = 550/629 (87%), Gaps = 25/629 (4%)
Strand=Plus/Plus
Query 22 ATGGATACTGAATCTTTCAAACTCGACGTTCATGTTA-AGGCTTGGTCTCAAGCTCCA-T 79
||||| || ||||||||||||||||| ||||||| || | |||| |||||||| | || |
Sbjct 1 ATGGAAACAGAATCTTTCAAACTCGATGTTCATG-TACAAGCTTTGTCTCAAGAT-CAGT 58
Query 80 CGTCAGGGTTCTTAAGCACGGTAGTAATCAGTCTAA-ACAGAGAATTCGAGGAATTTCTC 138
||| ||||||| |||| |||||| ||||||||| || |||||||| | ||||||||||||
Sbjct 59 CGTTAGGGTTCGTAAGTACGGTACTAATCAGTC-AATACAGAGAAGTAGAGGAATTTCTC 117
Query 139 ATTAACGAGAACGATGATAGTGTCATGAGTCTCGGATCTTACCC---TGATTCTTCT-CT 194
|| |||||||| ||||||| ||||| ||||||||||||||||| ||||||||| ||
Sbjct 118 ATCAACGAGAAGGATGATACTGTCACAAGTCTCGGATCTTACCCGGAGGATTCTTCTACT 177
Query 195 --TCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACTACGTCTATCAA 252
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 178 AGTCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACGACGTCTATCAA 237
Query 253 CTTCTCCAAACCCAACTCCACGATCATGTCTTGTCCGAACAAATAGCTTATAAGGTTGTC 312
| |||||| ||||| ||||||||||||| ||||||||||||| || |||| ||| |||||
Sbjct 238 CGTCTCCAGACCCATCTCCACGATCATGACTTGTCCGAACAATTATCTTACAAGATTGTC 297
Query 313 GAAGCCCAAC---GGCAAAGAAGTCAAAGTTTTTACTTGCCACAACAACAACCTTTATTC 369
||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 298 CAAGCCCAACAACGGCAAAAAAGACAAAGTTTTTACTTGCCACAACAACGACCTTTATTC 357
Query 370 ATGATAGTCTCTGTCAAATTGACACAGAAGGTATACAACGTTGTGCCTTGT-AGTTCTGC 428
||||| |||||||||||||||||||| ||||| |||||||||||| ||||| | ||||||
Sbjct 358 ATGATCGTCTCTGTCAAATTGACACACAAGGTTTACAACGTTGTGTCTTGTGA-TTCTGC 416
Query 429 TTCGTTGGCAACAGATTTGGACCAAGAGAGCCAA---GAAGAAGAAGA--A-TCGAAGAC 482
| |||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||
Sbjct 417 TCCGTTGGCAACAGATTTCGACCAAGAGAGCCAACAAGAAGAAGAAGAGGAATCGAAGAC 476
Query 483 TTGTGCCATCTGTTTGGAGAATCTGTCGAGATCCGAGGATTATTGCCAGATGCCTTA-TT 541
|||||||||||||||||||||| ||| |||||| |||||||| ||| |||||||| | ||
Sbjct 477 TTGTGCCATCTGTTTGGAGAATTTGTTGAGATCGGAGGATTACTGCGAGATGCCT-ACTT 535
Query 542 GCTCTCATTGTTTTCATGAACGATGTGTCACTAAGTGGGTGGTTGGACATAATAACTCGT 601
| || |||| ||||||||||| |||| ||||| ||||| || | || |||||||||| |
Sbjct 536 GTTCCCATTATTTTCATGAACCATGTCTCACTGAGTGGTTGACTCGAGATAATAACTCAT 595
Query 602 GCCCTCTCTGTCGCAAACCTGTTGACAAA 630
|||||||||||||||||||||||||||||
Sbjct 596 GCCCTCTCTGTCGCAAACCTGTTGACAAA 624
> AT2G24480.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr2:10397588-10398184 FORWARD LENGTH=597
Length=597
Score = 699 bits (378), Expect = 0.0
Identities = 538/613 (88%), Gaps = 19/613 (3%)
Strand=Plus/Plus
Query 22 ATGGATACTGAATCTTTCAAACTCGACGTTCATGTTAAGGCTTGGTCTCAAGCTCCATCG 81
|||||||||||||| ||||||||||| ||||||||| ||||||||||||||| || ||
Sbjct 1 ATGGATACTGAATCATTCAAACTCGATGTTCATGTTCAGGCTTGGTCTCAAGGTCGGTCA 60
Query 82 TCAGGGTTCTTAAGCACGGTAGTAATCAGTCTAAACAGAGAATTCGAGGAATTTCTCATT 141
| ||||||||||||||| ||||||||||||||| | |||||| |||||||||||||||||
Sbjct 61 TTAGGGTTCTTAAGCACCGTAGTAATCAGTCTACATAGAGAAGTCGAGGAATTTCTCATT 120
Query 142 AACGAGAACGATGATAGTGTCATGAGTCTCGGATCTTACCCTGATTCTTCTCT-TCACGA 200
|| ||||| ||||||||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct 121 AAAGAGAAAGATGATAGTGTCACGAGTCTCGGTTCTTACCCTGATTCTTCT-TGCCACGA 179
Query 201 CCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACTACGTCTATCAACTTCTCCA 260
||||||||||||||||||||| ||| |||| ||||||||| |||||| ||| | ||||||
Sbjct 180 CCCACTAATCTCTCTGAAACTACCATGTTTTAAACCAAACGACGTCTTTCACCGTCTCCA 239
Query 261 AACCCAACTCCACGATCATGTCTTGTCCGAACAAATAGCTTATAAGGTTGTCGAAGCCCA 320
|| ||||||||||||||||||| |||||||||| ||| ||| |||| |||||||||||||
Sbjct 240 AAGCCAACTCCACGATCATGTCATGTCCGAACAGATATCTTCTAAGATTGTCGAAGCCCA 299
Query 321 ACGGCAAAGAAGTCAAAGTTTTTACTTGCCACAACAACAACCTTTATTCATGATAGTCTC 380
||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 300 ACGACAAAGAAGTCAAAGTTTTTAC-T--CACAACAACAACCTTTATTCATGATTGTCTC 356
Query 381 TGTCAAATTGACACAGAAGGTATACAACGTTGTGCCTTGTAGTTCTGCTTCGTTGGCAAC 440
|||||||||||| || |||||||||| ||||| ||||||| |||| || ||| |||||
Sbjct 357 TGTCAAATTGACTCAAAAGGTATACAGTGTTGTCCCTTGTATTTCTTCTCCGTCAGCAAC 416
Query 441 AGATTTGGACCAAGAGAGCCAAGAAGAAGAAGAATCGAAGACTTGTGCCATCTGTTTGGA 500
||| | | | || || |||||||||||||| |||||||||| |||||||||||
Sbjct 417 AGA--T-G----TG-GA-CC---AAGAAGAAGAATCGGAGACTTGTGCAATCTGTTTGGA 464
Query 501 GAATCTGTCGAGATCCGAGGATTATTGCCAGATGCCTTATTGCT-CTCATTGTTTTCATG 559
|||| |||||||||| ||| |||||||||||||||||||||| | ||||||| |||||
Sbjct 465 GAATATGTCGAGATCTGAGAATTATTGCCAGATGCCTTATTG-TAAGCATTGTTATCATG 523
Query 560 AACGATGTGTCACTAAGTGGGTGGTTGGACATAATAACTCGTGCCCTCTCTGTCGCAAAC 619
|| |||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||
Sbjct 524 AAGGATGTGTCACCAAGTGGGTGATTGGTCATAATAACTCTTGCCCTCTCTGTCGCAAAC 583
Query 620 CTGTTGACAAATA 632
|||||||||||||
Sbjct 584 CTGTTGACAAATA 596
> AT5G43200.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr5:17346141-17346764 REVERSE LENGTH=624
Length=624
Score = 667 bits (361), Expect = 0.0
Identities = 551/638 (86%), Gaps = 31/638 (5%)
Strand=Plus/Plus
Query 22 ATGGATACTGAATCTTTCAAACTCGACGTTCATGTTAAGGCTTGGTCTCAAGCTCCATCG 81
||||| |||||||||||||||||||| |||||||| || |||| ||||||| |||| |||
Sbjct 1 ATGGAAACTGAATCTTTCAAACTCGATGTTCATGTAAAAGCTTTGTCTCAACCTCCGTCG 60
Query 82 TCAGGGTTCTTAAGCACGGTAGTAATCAGTCTAA-ACAGAGAATTCGAGGAATTTCTCAT 140
| |||||||||||| |||||||||||||||| || |||||||| | ||||||||||||||
Sbjct 61 TTAGGGTTCTTAAGTACGGTAGTAATCAGTC-AATACAGAGAAGTAGAGGAATTTCTCAT 119
Query 141 TAACGAGAACGATGATAGTGTCATGAGTCTCGGATCTTACCC---TGATTCTTCT-C-T- 194
|||| | || ||| || |||||| |||||||||||||||||| |||||||||| | |
Sbjct 120 TAACAACAAGGATAATTGTGTCACGAGTCTCGGATCTTACCCGGATGATTCTTCTACTTG 179
Query 195 TCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACTACGTCTATCAACT 254
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 180 TCACGACCCACTAATCTCTCTGACACTCCCAAGTTTCAAACCAAACGACGTCTATCAACA 239
Query 255 TCTCCAAACCCAACTCCACGATCATGTCTTGTCCGAACAAATAGCTTATAAGGTTGTCGA 314
|||||| ||||||||||||||||||| ||||||||| |||||| ||| |||| |||||||
Sbjct 240 TCTCCAGACCCAACTCCACGATCATGACTTGTCCGAGCAAATATCTTGTAAGATTGTCGA 299
Query 315 AG-CC--CAACGGCAAAGAAGTCAAAGTTTTTACTTGCCACAACAACAACCTTTATTCAT 371
|| || |||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 300 AGCCCAACAACGGCAAACAAGTCAAAGTGTTTACTTGCCACAACAACCACCTTTATTCAT 359
Query 372 GATAGTCTCTGTCAAATTGACACAGAAGGTATACAACGTTGTGCCTTGTAGTTCTGCTTC 431
|| |||||||||||||||||||| ||||| | || || | |||| | | || |
Sbjct 360 AATCGTCTCTGTCAAATTGACACACAAGGT-T--TAC---GT-CGTTGT-G--C--CTCC 407
Query 432 GTTGGCAACAGATTTGGACC-A-AGA-GAGCC-A--AGAAGAAGAAGAATCGAAGACTTG 485
|||||||||||||||||||| | ||| ||||| | ||||||||||||||||||||||||
Sbjct 408 GTTGGCAACAGATTTGGACCAAGAGATGAGCCAAGGAGAAGAAGAAGAATCGAAGACTTG 467
Query 486 TGCCATCTGTTTGGAG-AATCTGTCGAGATCCGAGGATTATTGCCAGATGCCTTATTGCT 544
|||||||||||||||| ||| |||||| |||||| ||||| ||| || ||||| | |||
Sbjct 468 TGCCATCTGTTTGGAGGAAT-TGTCGACATCCGATGATTACTGCGAGTTGCCTAACTGCA 526
Query 545 CTCATTGTTTTCATGAACGATGTGTCACTAAGTGGGTGGTTGGACATAATAACTCGTGCC 604
|||||||||||||||||| |||| ||||| ||||| || | || ||||||||| ||||
Sbjct 527 CTCATTGTTTTCATGAACCATGTCTCACTCAGTGGTTGATCCGAGGTAATAACTCATGCC 586
Query 605 CTCTCTGTCGCAAACCTGTTGACAAATAACAAGAGTGA 642
|||||||||||||||||||||||||| ||| | |||||
Sbjct 587 CTCTCTGTCGCAAACCTGTTGACAAACAACCACAGTGA 624
> AT4G14149.1 | Symbols: | Pseudogene of AT2G24480; zinc finger
(C3HC4-type RING finger) family protein | chr4:8157975-8158349
REVERSE LENGTH=375
Length=375
Score = 351 bits (190), Expect = 3e-96
Identities = 303/354 (86%), Gaps = 21/354 (6%)
Strand=Plus/Plus
Query 238 AACTACGTCTATCAACTTCTCCAAAC-CCAACTCCACGATCATGTCTTGTCCGAACAAAT 296
|||||||||||||||| ||| | ||| |||||||||||||| || | |||||| ||||||
Sbjct 7 AACTACGTCTATCAACGTCTTC-AACGCCAACTCCACGATCGTGACCTGTCCGGACAAAT 65
Query 297 A-GCTTATAAGGTTGTCGAAGCCCAACGGCAAAGAAGTCAAAGTTTTTACTTGCCACAAC 355
| | || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 66 ATG-TTCTAAGATTGTCGAAGCCCAACTGCAAAGAAGTCAAAGTTTTTACTTGCCACAAC 124
Query 356 AAC---AAC--C-TTTATTCATGATAGTCTCTGTCAAATTGACACAGAAGGTATACAACG 409
||| ||| | ||||||||||||||||||||||| ||||||||| ||| |||||| |
Sbjct 125 AACGTCAACAACCTTTATTCATGATAGTCTCTGTCAGATTGACACACAAGTTATACAGTG 184
Query 410 TTGTGCCTTGTAGTTCTGCTTCGTTGGCAACAGATTTGGACCAAGAGAGCCAAGAAGAAG 469
|||||||||||| |||| || ||| ||| ||||||||||||||||| || ||||||||
Sbjct 185 TTGTGCCTTGTATTTCTTCTCCGTCGGCGACAGATTTGGACCAAGA-AG--AAGAAGAA- 240
Query 470 AAGAATCGAAGACTTGTGCCATCTGTTTGGAGAATCTGTCGAGATCCGAGGATTATTGCC 529
||| |||||||||| ||||||||||||||| |||||||||| ||| ||| |||||
Sbjct 241 -----TCGGAGACTTGTGCAATCTGTTTGGAGAATATGTCGAGATCTGAGAATTGTTGCC 295
Query 530 AGATGCCTTATTGCTCT-CATTGTTTTCATGAACGATGTGTCACTAAGTGGGTG 582
||||||||||||| | ||||| | ||||||| ||||||||||||||||||||
Sbjct 296 AGATGCCTTATTG-TAAGCATTGCTATCATGAAGGATGTGTCACTAAGTGGGTG 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5