BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932499
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24490.1 | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | r... 1397 0.0
> AT2G24490.1 | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A |
replicon protein A2 | chr2:10398404-10400488 REVERSE LENGTH=1159
Length=1159
Score = 1397 bits (756), Expect = 0.0
Identities = 841/883 (95%), Gaps = 2/883 (0%)
Strand=Plus/Plus
Query 4 ATTTCCAAGCTTCGAAAATGTTCTCCAGCAGCCAATTCGAGCCTAATTCCGCCTTCTCCG 63
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 56 ATTTCGTAGCTTCGAAAATGTTCTCCAGCAGCCAATTCGAGCCTAATTCCGGCTTCTCCG 115
Query 64 GCGGCGGATTCATGTCTTCTCAACCTTCTCAGGCCTACGAATCCTCTTCCTCCACCGCTA 123
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 116 GCGGCGGATTCATGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTA 175
Query 124 AGAATCGTGAGTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAATGTTTTC 183
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 176 AGAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAATGTTTCC 235
Query 184 AGTCCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACGTCTCAC 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 236 AATCCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACGTTTCAC 295
Query 244 TTGTTGG-TCTAGTGTGTGATAAAGATGTTTCTAAAGTCACAGAAGTTAGATTCACTCTT 302
||||||| | |||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 296 TTGTTGGAT-TAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTT 354
Query 303 GATGATGGAACAGGACGAATTGACTGTAAAAGATGGGTGAATGAAACTTTCGACGCTAGA 362
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 355 GATGATGGAACAGGACGAATTGACTGTAAAAGATGGGTGAGTGAAACTTTCGACGCTAGA 414
Query 363 GAAATGGAGTCGGTGCGAGATGGAACTTATGTGCGTGTCAATGGTCATTTGAAGACTTTT 422
||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 415 GAAATGGAGTCTGTGCGAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTT 474
Query 423 CAGGGGAAAACGCAGCTTCTTGTTTTCTCTGTGAGGCCTATTATGGACTTCAATGAGGTT 482
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CAGGGCAAAACTCAGCTTCTTGTTTTCTCTGTGAGGCCTATTATGGACTTCAATGAGGTT 534
Query 483 ACTTTTCACTACATTGAGTGTATACACTTCTACTCCCAGAACTCTGAATCACAGGGACAA 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 535 ACTTTTCACTACATTGAGTGTATACACTTCTACTCCCAGAACTCTGAATCACAGAGACAA 594
Query 543 CAAGTTGGTGATGTCAATCAATCGGTTAACACCACGTTTCAAGGTGGATCAAACACAAAC 602
||||| |||||||||| ||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 595 CAAGTCGGTGATGTCACTCAGTCAGTTAACACCACATTTCAAGGTGGATCAAACACAAAC 654
Query 603 CAGGCAACACCATTGAACCCTGTTGTGTCCTCTCAAAACAATGACGGAAATGGGCGCAAG 662
|||||||||| |||||||||||| || || |||||||||||||| || ||||||||||||
Sbjct 655 CAGGCAACACTATTGAACCCTGTGGTTTCTTCTCAAAACAATGATGGCAATGGGCGCAAG 714
Query 663 AACTTAGATGACATGATTCTAGACTATCTAAAGCAACCTGCTTGCACTGAAAGACAACAG 722
||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 715 AACTTGGATGATATGATTCTAGACTATCTAAAGCAACCTGCTTGCACTGCAAGACAACAG 774
Query 723 GGGATACACATTGATGAAATTGCTCAGCAATTGAAGGTCCCAAAGAACAAGCTAGAGGGC 782
|||||||| || ||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 775 GGGATACATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGAGGGC 834
Query 783 GTTGTTCAATCACTGGAAGGAGATGGTCTAATATACTCGACAATCGATGAGTATCACTTC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTTGTTCAATCACTGGAAGGAGATGGTCTAATATACTCGACAATCGATGAGTATCACTTC 894
Query 843 AAGCACGTCGAGCTTTGATCTATCTAATAGTCATCTAGAGTTT 885
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct 895 AAGCACGTGGAGCTTTGATCTATCTAATAGTCATCTAGAGTTT 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5