BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932510
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24530.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1886 0.0
AT4G31440.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 215 9e-55
> AT2G24530.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G31440.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr2:10421841-10424113 FORWARD LENGTH=1827
Length=1827
Score = 1886 bits (1021), Expect = 0.0
Identities = 1186/1264 (94%), Gaps = 18/1264 (1%)
Strand=Plus/Plus
Query 12 AGAGTAATCATGCAACGTTCTCAATATCAGAGGATTGA-TTTGTGTGAATTGAAAGAGCA 70
|||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 302 AGAGTAATCATGCAACGTTCTCAAGATCAGAGGATT-AGCTTGTGTGAATTGAAAGAGCA 360
Query 71 TATTGTGAAGAAGATTGGTGTCGAAAGATCGACAAGGTATTTTTATTACCTAGGCAGGTT 130
|||||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 361 TATTGTGAAGAAGACCGGTGTCGAAAGATCGAGAAGGTATTTCTATTATCTAGGCAGGTT 420
Query 131 TCTGAGTCAGAAGCTTACTAAGAGTGAATTTGATAAGACATGCTTGAGGTTGTTAGGGAG 190
||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 421 TCTAAGTCAGAAGCTTACTAAGAGTGAGTTTGATAAGACGTGTTTGAGGTTGTTAGGGAG 480
Query 191 GGAGAATCTCTCTTTACACAACCAGTTGATCCGTTCGATCTTGAGGAATGCAACTGTCGC 250
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 481 GGAGAATCTCTCTTTACATAACCAGTTGATACGTTCGATCTTGAGGAATGCGACTGTTGC 540
Query 251 TAAGTCACCACCACCAGATCATGAAGTTGGTCATTCGACTAAACCTTTGGTGAATGCTTT 310
|||||||||||| ||||||||||||| ||||||||||||| || || |||||||||
Sbjct 541 TAAGTCACCACCTCCAGATCATGAAGCTGGTCATTCGACT-AA-----GGCGAATGCTTT 594
Query 311 TCAAAGTAGAGGAGATGGTCTTGAGCAAAGTGGATCTTTAATCCCTAATCATAATCAGCA 370
||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 595 TCAGAGTAGAGGAGACGGTCTTGAGCAAAGTGGAACTTTAATCCCTAATCATAGTCAGCA 654
Query 371 TGAGCCTGTTTGGTCCAACGGGGTTTTGCCCATCTCTCCGCGGAAAGTTAGGTCTGGAAT 430
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 655 TGAGCCTGTTTGGTCTAACGGGGTTTTGCCTATCTCTCCGCGGAAAGTTAGGTCTGGAAT 714
Query 431 GCGTG-ACAGGAAGAGCAGAGATAGGCCTAGTCCACTAGGGTCAAACGGGAAGGTTGAAC 489
|| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 715 GC-AGAACAGGAAGAGCAGAGATAGGCCTAGTCCACTAGGGTCAAATGGGAAGGTTGAAC 773
Query 490 ATATGTTGCATCAGCCAGTTTGTAGAGAAGACAATAGAGGTAGTGTTGGTATGGAAAATG 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ATATGTTGCATCAGCCAGTTTGTAGAGAAGACAATAGAGGTAGTGTTGGTATGGAAAATG 833
Query 550 GGGATTATCAAAGATCAGGCAGATATGTTGCTGATGAAAGAGATGGTGAATTTCTTCGTC 609
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 834 GGGATTATCAAAGATCAGGCAGATATGTTGCTGATGAAAAAGATGGTGAGTTTCTTCGTC 893
Query 610 CCGTGGAAAAACCAAGAATACTAAATAAGGAAAAGGTTGCAACTGCGTCTATGAGAGATG 669
||||||||||||| ||||||| ||||||||||||| ||||| ||| ||||||||||||||
Sbjct 894 CCGTGGAAAAACCGAGAATACCAAATAAGGAAAAGATTGCAGCTGTGTCTATGAGAGATG 953
Query 670 ATGAGAATCAAGAAGAGCAGGCTAG-GCTAAATTTATCAATGAGTCCCCTTATTGCACCT 728
|| |||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||
Sbjct 954 ATCAGAATCAAGAAGAGCAGGCTAGAG-TAAATCTATCAATGAGTCCTCTTATTGCACCT 1012
Query 729 CTAGGGATTCCATTTTGTTCAGCTAGTGTCGGTGGGTCCCGTAGAACGGTTCCTGTTTCA 788
|||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 1013 CTAGGGATTCCATTTTGTTCAGCTAGTGTCGGTGGGTCCCCTAGAACGATACCTGTTTCA 1072
Query 789 ACCAGCGCTGAGCTAATTAGTTGCTATGACAGTGGTGGATTACCCGATATAGAGATGCTA 848
|||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1073 ACCAACGCTGAGTTAATTAGTTGCTATGACAGTGGTGGATTACCTGATATAGAGATGCTG 1132
Query 849 AGGAAAAGGATGGAGAATATTGCAGTAGCACAGGGTCTTGAAGGGGTTTCGGTGGAGTGT 908
|||||||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 1133 AGGAAAAGAATGGAGAATATTGCTGTAGCACAGGGTCTTGAAGGTGTTTCGATGGAGTGT 1192
Query 909 GCTAAGACGTTGAATAACATGTTGGATGTGTATCTGAAGAAGCTGATCAAATCGTGCTTT 968
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1193 GCTAAGACGTTGAATAACATGTTGGATGTATATCTGAAGAAGCTGATCAATTCTTGCTTT 1252
Query 969 GATTTGGTTGGAGCCCGGTCCACTAATGGAGATCCTGGGAAACAAAC-TATAGGCAAGCA 1027
||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 1253 GATTTGGTTGGAGCCCGGTCCACAAATGGAGATCCTGGGAAACAA-CGTATAGGCAAGCA 1311
Query 1028 GCAGAGTCAAAACAAGATTGTAAATGGGGTGTGGCCAAGTAACAGTTTGAAAATAGAAAC 1087
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1312 GCAGAGTCAAAACAAGATTGTAAATGGGGTGTGGCCAACTAACAGTTTGAAAATACAAAC 1371
Query 1088 TCCCAATGGGCCTTCTGATATAACACAAGATCATCATTCTGTGTCTCTGCTTGATTTTAG 1147
||| |||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1372 TCCTAATGGGTCTTCTGATATAAGACAAGATCATCATTCTGTGTCTATGCTTGATTTTAG 1431
Query 1148 AACTGCCATGGAGTTAAATCCACAGC-AGCTTGGCGAAGACTGGCCAACTCTCCGAGAGA 1206
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1432 AACTGCCATGGAGTTAAATCCAC-GCCAGCTTGGCGAAGACTGGCCAACTCTCCGAGAGA 1490
Query 1207 GAATTTCCAT-GCGGTCTTTCGAGGAACAAGACTTCGAGGTGTGAAAGACATCTTCCGCA 1265
||||||| || |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1491 GAATTTC-ATTGCGGTCTTTCGAGGAACAAGACTTTGAGGTGTGAAAGACATCTTGAGCA 1549
Query 1266 TGCT 1269
||||
Sbjct 1550 TGCT 1553
> AT4G31440.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G24530.1);
Has 210 Blast hits to 209 proteins in 55 species: Archae -
0; Bacteria - 72; Metazoa - 2; Fungi - 6; Plants - 128; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:15253731-15254870
FORWARD LENGTH=1140
Length=1140
Score = 215 bits (116), Expect = 9e-55
Identities = 210/255 (82%), Gaps = 8/255 (3%)
Strand=Plus/Plus
Query 21 ATGCAACGTTC-TCAATATCAGAGGATTGAT-TTGTGTGAATTGAAAGAGCATATTGTGA 78
|||||||| || |||| ||| ||||||||| | | ||| | |||| |||||| ||||
Sbjct 1 ATGCAACG-TCTTCAAGATCCCAGGATTGATCTAG-CTGAGCTAAAAGTGCATATAGTGA 58
Query 79 AGAAGATTGGTGTCGAAAGATCGACAAGGTATTTTTATTACCTAGGCAGGTTTCTGAGTC 138
||||| |||| || |||||||| |||||||||||||| ||| | ||||||||||||||||
Sbjct 59 AGAAGGTTGGGGTTGAAAGATCTACAAGGTATTTTTACTACTTGGGCAGGTTTCTGAGTC 118
Query 139 AGAAGCTTACTAAGAGTGAATTTGATAAGACATGCTTGAGG-TTGTTAGGGAGGGAGAAT 197
||||||||||||||||||| ||||||||| |||| || | || || ||||| ||||||
Sbjct 119 AGAAGCTTACTAAGAGTGAGTTTGATAAGTCATGTTTCCGTCTT-TTGGGGAGAGAGAAT 177
Query 198 CTCTCT-TTACACAACCAGTTGATCCGTTCGATCTTGAGGAATGCAACTGTCGCTAAGTC 256
|| ||| || ||||| ||||||| ||||| |||||||| |||||| || | ||||||||
Sbjct 178 CTTTCTCTT-CACAATAAGTTGATTCGTTCCATCTTGAGAAATGCATCTCTGGCTAAGTC 236
Query 257 ACCACCACCAGATCA 271
|||||| ||| |||
Sbjct 237 CCCACCATCAGTTCA 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62499678525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5