BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932541
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24696.1 | Symbols: | transcriptional factor B3 family prot... 863 0.0
> AT2G24696.1 | Symbols: | transcriptional factor B3 family protein
| chr2:10509068-10510902 REVERSE LENGTH=1128
Length=1128
Score = 863 bits (467), Expect = 0.0
Identities = 668/764 (87%), Gaps = 18/764 (2%)
Strand=Plus/Plus
Query 479 AAAGCTACCAACCCAGAAGAGATTTGTGACTGTAAGAGTCGTACCTGATTGTC-T-CAAA 536
|||| |||||| |||| ||||||| |||||||||||| |||||||||| |||| | |||
Sbjct 369 AAAGTTACCAAACCAGGAGAGATTCGTGACTGTAAGACTCGTACCTGACTGTCTTAGAAA 428
Query 537 CGTTGTAGACTGTATCTCTCAAGGCGGTTCTTGAAAAATAATGGTTTGGGGGAAACAAAG 596
| ||| |||||||||||||||| ||| ||||||||||||| ||||| ||| |||||
Sbjct 429 C--AAAAGATTGTATCTCTCAAGGCGATTCCTGAAAAATAATGGCTTGGGCGAACCAAAG 486
Query 597 ATGGTAACACTACTGGGAACAGATGGTACAAGGAGGTTGGCAAATCTTGTACGGGAAACC 656
|||||||||||| |||||||||||||||| |||| ||||| |||||| ||||||||| |
Sbjct 487 ATGGTAACACTAGTGGGAACAGATGGTACGAGGATATTGGCTAATCTTTTACGGGAAAGC 546
Query 657 AGTGGACGAATGAGCTTGGGTAGGGGTTGGGTTGAGTTTGCGAAAGAAAAT-GGTTTGAA 715
| ||| ||||||||||||| ||||| ||||| || |||||||||| ||| || |||||
Sbjct 547 ACAGGAAGAATGAGCTTGGGAAGGGGATGGGTAGATTTTGCGAAAGCCAATAGG-TTGAA 605
Query 716 GATAGGTCAGTACTTTACACTGGAGTCCATTTGGGCAAATGA-TAGTCCTATCCTCAAAT 774
||||||| ||||||||||||||||||||||||||| |||||| | |||||| |||| |
Sbjct 606 GATAGGTGAGTACTTTACACTGGAGTCCATTTGGGAAAATGACT-CTCCTATTCTCAGTT 664
Query 775 TGTCTAGTACAAATGA-TTCCAAAAGTGATAAAAGGAAGCATAGAGAGAACTTTCCAGTA 833
||| | | |||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 665 TGTATGGGACAAAT-ACTTCCAAAAGTGATAAAAGGAAGCGTAGAGAGAACTTTCCAGTA 723
Query 834 GCTAGCCACAAAGAGTTTGTTTCCACTGAGGCTAGCGATGGAAACGAACCCGAGAAAGAC 893
||| | | ||||||| ||| |||||||||||||| || |||| |||||||||||||||
Sbjct 724 GCTTGTGAGAAAGAGTATGTGTCCACTGAGGCTAGAAATAGAAATGAACCCGAGAAAGAC 783
Query 894 ATGAACACAGAGGAGATGATTAATCAATCATCACTAATCGATAACCGATTAGTGATATTA 953
| ||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |
Sbjct 784 AAGAACACAGAGGAGATGATTAATCAAGCATCACTAAGCGAAAACCGATTAGTGATA--A 841
Query 954 GCACTCGAACCTGAGGATGCCAAAGCCGGAATGCTGTATCTTCCAAGTCACTTCATGAAA 1013
|||||| ||| || |||| ||||||||| |||||| ||||||||||||||||||||||
Sbjct 842 -CACTCGTACCAGAAGATGTCAAAGCCGGTATGCTGCGTCTTCCAAGTCACTTCATGAAA 900
Query 1014 GCTAATGGCATCGACAAAATTGGAAAAATATATATGTTGGGTACAAATGAAATGGAGTGG 1073
||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 GCTAATGGCATAGACAAAGTTGGAAAAATATATATGTTGGGTATAAATGAAATGGAGTGG 960
Query 1074 TGGTGGGGAAATCTATTGACAAGAGATGGAATCGTATCTGTAGGATGTCGTTGGAGATAC 1133
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 961 TGGTGGGGAGATCTATTGACAAGAGATGGAATCGTATCTGTAGGATGTGGTTGGAGATA- 1019
Query 1134 TTT-TGTAAATCTAATGGCGTAAAGATTGGACAA-TATTTCAAATTAGAATATATGTATA 1191
||| ||| ||||||||||||||||||||||| || | ||||| ||||||| |||||| |
Sbjct 1020 TTTCTGTGAATCTAATGGCGTAAAGATTGGA-AAGTCTTTCACCTTAGAATGTATGTACA 1078
Query 1192 AGTATGACACAAGGCCGGTACTCAAATT-TGTCCCAAGTCCGGG 1234
| |||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 1079 AATATGACACAAGGCCCGTATTTAAATTCTGTCCCAAGTCCGGG 1122
Score = 459 bits (248), Expect = 4e-128
Identities = 334/374 (89%), Gaps = 12/374 (3%)
Strand=Plus/Plus
Query 22 TGTTTAACGTCAGCGCTTGTGACATCCGTGACAAACCCA-GCCCCAGCAACATTGAAATC 80
|||| ||||||||||| |||||||||||||||||||||| | |||||||||| ||| |||
Sbjct 5 TGTTCAACGTCAGCGCCTGTGACATCCGTGACAAACCCATG-CCCAGCAACAATGATATC 63
Query 81 AAGAAGCTCGTA-CTGCTTGAAAGAGaaaaaaaaGTGAGGAAGATCAATTCACAATCCGA 139
|| ||| ||| | | ||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 64 AACAAGATCG-ATCAGCTTGAAAGAGTAAAAAAAGTGAGGAAGAACAGTTCACAATCCGA 122
Query 140 AGCTAG-TACTTCTTCATC-GGATAACTCTTCTTTTGTAGCCCTTGTCAAGGCTTCAAAT 197
|||| | | |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 123 AGCTGGCT-CTTCTTCATCTGG-CAACTCTTCTTTTGTAGCCCTTGTCAAGGCTTCAAAT 180
Query 198 CTAGAGGAAGATACTCTGTATCTTCCACAAGATTGCACAAGATCTAATGGTCTGAATCGA 257
||| |||||||| | |||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 181 CTAAAGGAAGATGCACTGTATCTTCCACAAGATTGCACAAGTTCTAATGGTCTAAATAAA 240
Query 258 AAATGCCGCAAGATTGTTT-TAACAGATGGAGGG-AGTAGATCATGGGAAATGGAACTGA 315
||||||||||||||| ||| |||||||||||||| | |||||||||||||||||| ||||
Sbjct 241 AAATGCCGCAAGATT-TTTCTAACAGATGGAGGGGA-TAGATCATGGGAAATGGATCTGA 298
Query 316 AATTCAAGAAAAACTTGGGTAGTTTTTACATAACGAGAGGTTGGAGACATTTCTGTGACG 375
| ||| | |||||||| | |||||||| |||||| |||||||||||||||||||||||||
Sbjct 299 AGTTCGACAAAAACTTAGATAGTTTTTGCATAACCAGAGGTTGGAGACATTTCTGTGACG 358
Query 376 AAAACGGCAAAAAG 389
||||||| ||||||
Sbjct 359 AAAACGGGAAAAAG 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5