BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932542
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:6... 780 0.0
AT1G60180.1 | Symbols: | pseudogene of F-box family protein | ... 549 3e-155
AT2G04150.1 | Symbols: | pseudogene of F-box family protein | ... 342 5e-93
AT5G02930.1 | Symbols: | F-box/RNI-like superfamily protein | ... 121 2e-26
> AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500
FORWARD LENGTH=1371
Length=1371
Score = 780 bits (422), Expect = 0.0
Identities = 1044/1329 (79%), Gaps = 103/1329 (8%)
Strand=Plus/Plus
Query 90 GAAGGAGTAGACTTAATAAGCTCTTTACCTGATTCT-ATCCTCCAACATATCCTCTCCTT 148
|||| |||||||| |||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 82 GAAGCAGTAGACTCAATAAGCTCTTTACCTGA-TGTGATCCTCCAACATATCCTCTCCTT 140
Query 149 TATTCCGACCAAGTTAGCCATCAGAGCCTCCCTCTTGTCCAAACGATGGAGACATGTATG 208
|||||||||||| | ||||||| | | ||||||||||| ||||||||||||||||||||
Sbjct 141 TATTCCGACCAAACTCGCCATCACAACTTCCCTCTTGTCAAAACGATGGAGACATGTATG 200
Query 209 GTGCGATATACCTTCTCTCTC-CTTAGATGACCAGACACTGAAGGAT--ACTT-CA-A-- 261
||| |||| ||||||||| || ||| |||| | | |||| ||| | | || | |
Sbjct 201 GTGTGATACACCTTCTCTTTCATTTA-ATGATTACAGACTGGAGGCTCCATTTATAGACG 259
Query 262 TAACCCTAAATCGCT-T-CA-CTTCTCTGAAGATAATGAATTTTCATCTCAACACCA-CA 317
|||||||| ||||| | || |||| | ||||| ||| |||||| ||| | |||| |
Sbjct 260 AAACCCTAACTCGCTATACAGCTTC-C--AAGATGATGCGTTTTCACCTCCATACCAGC- 315
Query 318 ATGAAGC-AGAATATTCCCCATATCA-ACAAG-TGGGTCGAGTTCGCCATATCCCGCAAC 374
|| | | | ||| ||||||| | | | ||| ||| || |||||||||| ||||| |||
Sbjct 316 TTG-ATCAACAATGTTCCCCA-CTTAGA-AAGTTGGATCAAGTTCGCCATGTCCCGTAAC 372
Query 375 GTGGAGAATCTTTCCCTGGATTTCTGGAACCCTAGTT-CCAGTTACAAGTTTGAGATTCC 433
||||| |||| ||||||||| ||||||| | |||| ||| | |||||| || ||||
Sbjct 373 GTGGATCATCTGTCCCTGGATCTCTGGAA-TCAAGTTGCCA---ATAAGTTTAAGTTTCC 428
Query 434 TGATTTCTTCTACGTCAATTCATCTGTTAAGCAACTCACCATTAAGTTAAG-CTTTACTG 492
|||||||||| || ||||||||||| | ||||||||||| || ||| || |||| |||
Sbjct 429 TGATTTCTTCCACATCAATTCATCTCTCAAGCAACTCACTGTTGTGTT-AGACTTTTCTG 487
Query 493 ATCTTATGGTTCCCGCATGCTCCCTATCTTGGACATCCCTGAAGAAGTTGTACTT-ACGT 551
| || | | | || | || | | || |||||||||||||||||| | ||
Sbjct 488 A---TA-CGAT---G-AT--TGCC-A---T----ATGCCTGAAGAAGTTGTACTTGA-GT 528
Query 552 AATTGTAATCTCTCTGATGAATCCATGGCTAAGATTCTATCTGGTAT-TCCCCTTCTCGA 610
| |||| |||||||||||||||||||||||| ||||||| |||| | ||| |||||||
Sbjct 529 ACTTGTCTTCTCTCTGATGAATCCATGGCTAACATTCTATTTGGT-TGTCCAATTCTCGA 587
Query 611 AAGCTTAACA-TTGTATTTCTGCAATGAACTAAGGGTTCTGGATCTCAGTAAATCACTGC 669
||||||||| | | || |||| || |||||||||||| |||||||| ||||||||||
Sbjct 588 GAGCTTAACACTAG-ATCACTGCGGTGGACTAAGGGTTCTTGATCTCAGCAAATCACTGC 646
Query 670 GTTTGAGAACGTT-GAAGATAAACCGCAAAATTTGGGTTCCGGGGCCAA---C-A--CAT 722
| ||||||| || ||| |||||| | || ||||||||||| | || || | | ||
Sbjct 647 GCCTGAGAACATTAGAA-ATAAACTGTAACATTTGGGTTCCCGAGCTAACGGCAATGCAG 705
Query 723 ATTGTGGCACCACATATCTATCGTCTCAGATTGAGAAACTCTCAGTTACCATGTACTTTT 782
|||||||| ||||||| | || |||||||||||||||||||| | |||||||||| | ||
Sbjct 706 ATTGTGGCTCCACATACCCATTGTCTCAGATTGAGAAACTCTAAATTACCATGTAGTCTT 765
Query 783 GTTGATCTCTCGT--CTTTAGCCGAAGCTAGACTGGACATTTGCATTGTCCCAATAACCC 840
|||||| |||| | || || ||||||| ||| |||||||||||| | || | |
Sbjct 766 GTTGATGTCTCATCACTGAAG--GAAGCTAAACTTAACATTTGCATTGACTCATTTTCTA 823
Query 841 GAACCTTCAAGGCTGATTTTCTTCAAGACATGGTACTAAAGATGTTAGAAAAGTTGCAGA 900
|||| |||||||||| |||||||||| || | | |||||||||| ||||||||||| |
Sbjct 824 AAACCATCAAGGCTGACTTTCTTCAAGTCACGCTGTTAAAGATGTTGGAAAAGTTGCACA 883
Query 901 ATGTAGAGAAGCTTACTTTTGGG-GGAAACTTTCTTCATATTATATCTC-TTGCCGAGGT 958
| || ||||||||||| |||||| |||||||||||||| ||| |||| | |||||||| |
Sbjct 884 ACGTGGAGAAGCTTAC-TTTGGGTGGAAACTTTCTTCAGATTTTATC-CGTTGCCGAGCT 941
Query 959 TCGTGGTGTTCGTTTTCCGATGTTCAAGGTGAAAGACTTGACTCTGGAGACAGTGATCTT 1018
||||||||| | ||| |||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 942 TCGTGGTGTCCCTTTCCCGATGTTCAAGGTGAAAGATTTGACTCTCGAGACAGTCATCTT 1001
Query 1019 TCAGTATGTTATTCCTGGTATAGAAAGACTGTTACAAAACTCACCTAATTTAAAGAAGCT 1078
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1002 TCAGTATGTTATTCCTGGTATAGAAAGAGTGTTACAAAACTCACCTGATTTAAAGAAGCT 1061
Query 1079 AACTAT-ACGCGCAAGGGATACCAACACCATA--C-GGAAGGAGTATATAAACAACTACT 1134
||| || || | ||| |||| | || | ||| | || | ||||| | | || ||
Sbjct 1062 AAC-ATTACTCACAAAGGATTTCTAC-C-ATAAACCGGGTG-AGTATCTTGGCGACCACA 1117
Query 1135 TGAAGTTGCAAGGCTTAAACCTAGATCAATGCTGGAGATCAAAAGATGGGGTCGTTTTC- 1193
|| | ||| ||||||| || || |||||||| |||| ||||||| |||| ||| ||||
Sbjct 1118 TGGATTTGGAAGGCTTTAATCTCGATCAATGTTGGAAATCAAAATATGGTGTC-TTTTGG 1176
Query 1194 AACAATTTACGTTGGGATTTAGAGTCAAAGCACGC-GACTTCATTTGTGGAACTTGTGCT 1252
||||| | | ||| |||| |||||||| |||||| | |||||| ||||||||| ||||
Sbjct 1177 AACAAGTCATGTTTGGATGTAGAGTCAGAGCACGTTGT-TTCATTCGTGGAACTTATGCT 1235
Query 1253 TAAAAACACAAAGACATTGAAGTTAGACAAGATAGTCATACTTTTG-AATGAGCGTTACC 1311
||||||||||||| |||| | | | |||||| ||| |||| ||| || || | ||||
Sbjct 1236 TAAAAACACAAAGGCATT-A-G--A--CAAGATGGTCGTACTGTTGGAA-GACCATTACG 1288
Query 1312 TTCGGTTTAAGTTTGAAGAGCTGGTCGTTCCAACACTTTCTCATAAC-A-ACT-TCTCCA 1368
|| ||||||| || || |||| | |||| ||||||||| ||| | | | ||||||
Sbjct 1289 TTAGGTTTAAA---GA-GA--TGGT--T-CCAAGACTTTCTCACAACTATAATATCTCCA 1339
Query 1369 TTGCGCTCT 1377
|||| ||||
Sbjct 1340 TTGCCCTCT 1348
> AT1G60180.1 | Symbols: | pseudogene of F-box family protein
| chr1:22195525-22196685 REVERSE LENGTH=891
Length=891
Score = 549 bits (297), Expect = 3e-155
Identities = 686/867 (79%), Gaps = 54/867 (6%)
Strand=Plus/Plus
Query 509 ATGCTCCCTATCTTGGACATCCCTGAAGAAGTTGTACTTACGTAATTGTAATCTCTCTGA 568
||| ||| |||||||||| |||||||||||||||| | | ||| |||| | ||||||||
Sbjct 12 ATGTTCCGTATCTTGGACGTCCCTGAAGAAGTTGTCCCTGCGTTTTTGTGAGCTCTCTGA 71
Query 569 TGAATCCATGGCTAAGATTCTATCTGGTAT-TCCCCTTCTCGAAAGCTTAACATTGTATT 627
||||| || || ||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 72 TGAATGTATTGCGAAGATTCTATCTGGT-TGTCCGATTCTCGAAAGCTTAACATTGTCCC 130
Query 628 TCTGCAAT-GAACTAAGGGTTCTGGATCTCAGTAAATCACTGCGTTTGAGAACGTT-GAA 685
|||| || | || | |||||| ||||| || ||||| ||||| |||||||| || |||
Sbjct 131 ACTGC-ATCTACCTTACGGTTCTTGATCTTAGCAAATCGCTGCGCTTGAGAACATTAGAA 189
Query 686 GATAAACC-GCAAAATTTG-GGTTCCGGGGCCAACACATATTGTGGCACCACATATCTAT 743
|| | || |||| | ||| | || |||||| || ||||||||||| |||||| ||
Sbjct 190 -AT-AGCCTGCAACA-TTGACAATACGAGGCCAAGGCAGATTGTGGCACCGCATATCCAT 246
Query 744 CGTCTCAGATTGAGAAA-CTCTCAGTTACCATGTACTTTTGTTGATCTCTCGTCTTTAGC 802
||||||||| ||| ||| || ||||| ||||||| |||| |||||| ||||||||||||
Sbjct 247 CGTCTCAGACTGA-AAACCTATCAGTCACCATGTGCTTTAGTTGATGTCTCGTCTTTAGA 305
Query 803 CGAAGCT-AGACTGGACAT-TTGCA-TT-GTCCCA-ATAACCCGAACCTTCAAGGCTGAT 857
|||||| | | ||||| | || || || || || ||| | ||| || | ||| ||
Sbjct 306 TGAAGCTCA-AGTGGAC-TGTTTCATTTACTCACATCTAA--AG-ACCCTCGACGCTTAT 360
Query 858 TTTCTTCAAGACATGGTAC-TAAAGATGTTAGAAAAGTTGCAGAATGTAGAGAAGCTTAC 916
|| ||||||||||| | | |||| ||| |||| ||||||||||||| |||||||||||
Sbjct 361 TTACTTCAAGACAT--T-CTTAAA-ATGCTAGAGAAGTTGCAGAATGCAGAGAAGCTTAT 416
Query 917 TTTTGGGGGAAACTTTCTTCATATTATATCTCTTGCCGAGGTTCGTGGTGTTCGTTTTCC 976
||||||| | ||| ||||||| ||| ||||||||||||||||| | ||| ||| ||| ||
Sbjct 417 TTTTGGGTGCAACATTCTTCAGATTTTATCTCTTGCCGAGGTTTGCGGTCTTCCTTTCCC 476
Query 977 GATGTTCAAGGTGAAAGAC-TTGACTCTGGAGACAG-TGATCTTTCAGTATGTTATTCCT 1034
|||||||||| |||| | |||||||| ||||||| | |||||||||||||||||||||
Sbjct 477 GATGTTCAAGACAAAAG-CTTTGACTCTTGAGACAGAT-ATCTTTCAGTATGTTATTCCT 534
Query 1035 GGTATAGAAAGACTGTTACAAAACTCACCTAATTTAAAGAAGCTAACTA-TACG-CGCAA 1092
|||||||||||||| ||||||||||||||| ||||||||| | | || | | || | |||
Sbjct 535 GGTATAGAAAGACTTTTACAAAACTCACCTGATTTAAAGACGGTGAC-AGTTCGTC-CAA 592
Query 1093 GGGATACCAACACCATAC-GGA-AGGAGTATATAAACAACTACTTGAAGTTGCAAGGCTT 1150
| ||| ||||| ||| | || ||| || | | | |||||||||| | |||||||||||
Sbjct 593 GTGATGGCAACATCATGCCGGGTAGGTGTTT-TGA-CAACTACTTGGACTTGCAAGGCTT 650
Query 1151 AAA-CCTAGATCAATGCTGGAGATCAAAAGATGGGGTCGTTTTC-AACAATTTACGTTGG 1208
|| || | ||||||| ||||||||||||||||||||| |||| || || | |||| |
Sbjct 651 GAATCCGA-ATCAATGTTGGAGATCAAAAGATGGGGTC-TTTTGGAATAAATCCCGTTCG 708
Query 1209 GATTTAGAGTCAAAGC-ACGCGACTTCATTTGTGGAACTTGTGCTTAAAAACACAAAGAC 1267
|||||| ||||||| | | ||||| ||| ||||||||| ||||||||||||||||||
Sbjct 709 AATTTAGGGTCAAAGAGA-GTGACTTTATTCGTGGAACTTATGCTTAAAAACACAAAGA- 766
Query 1268 ATTGAAGTTAGACAAGATAGTCATACTTTTGAATGAGCGTTACCTTCGGTTTAAGTTTGA 1327
| | ||||||||||| ||| | | || || || | ||||||| ||| |||||| |
Sbjct 767 -T--A--TTAGACAAGATGGTCGTTCAGTTAAACGAACATTACCTTAGGTCTAAGTTAAA 821
Query 1328 AGAGCTGGTCGTTCCAACACTTTCTCA 1354
|||| | | ||||||||| |||||||
Sbjct 822 AGAGTT--T-GTTCCAACATTTTCTCA 845
> AT2G04150.1 | Symbols: | pseudogene of F-box family protein
| chr2:1400044-1401282 FORWARD LENGTH=1239
Length=1239
Score = 342 bits (185), Expect = 5e-93
Identities = 411/517 (79%), Gaps = 28/517 (5%)
Strand=Plus/Plus
Query 430 TTCCTGATTTCTTCTACGTCAATTCATCTGTTAAGCAACTC-ACCATTAAGTTAAG-CTT 487
|||||||||| |||||| ||||||| ||||||||||||||| ||| |||| ||||| | |
Sbjct 19 TTCCTGATTTTTTCTACATCAATTCCTCTGTTAAGCAACTCAACC-TTAAATTAAGCCCT 77
Query 488 TACTGATCTTATGGTTCC-CGCATGCTCCCTATCTTGGACATCCCTGAAGAAGTTGTACT 546
| |||| | |||||||| | | |||| | ||||||||||| ||| |||||||||||
Sbjct 78 T-GTGATATGATGGTTCCTAG-AGGCTCAGTGTCTTGGACATCTCTGCGGAAGTTGTACT 135
Query 547 TACG-TAATTGTAATCTCTCTGATGAATCCATGGCTAAGATTCTATCTGGTATTCCCCTT 605
| | || || || ||| |||||||||||||||||||||||||||||||| | ||| ||
Sbjct 136 T-GGATAGTTCTAGTCTTTCTGATGAATCCATGGCTAAGATTCTATCTGGCAGTCCGATT 194
Query 606 CTCGA-AAGCTTAACA-TTGTATTTCTGCAATGAACT-AAGGGTTCTGGATCTCAGTAAA 662
|| || ||| |||| | |||| || |||||| | ||| ||| |||| |||||||| |||
Sbjct 195 CTTGAGAAG-TTAA-AGTTGTGTTCCTGCAAGGCACTCAAGA-TTCTTGATCTCAGCAAA 251
Query 663 TCACTGCGTTTGAGAACGTT-GAAGATAAACCGCAAAATTTGGGTTCCGGGGCCAACAC- 720
||| ||||| ||||||| || ||| |||||| || | | | || | | ||| |
Sbjct 252 TCAATGCGTCTGAGAACATTAGAA-ATAAACTGCGACACTAAGGA---G---C-AACTCC 303
Query 721 ATATTGTGGCACCACATATCTATCGTCTCAGATTGAGAAACTCTCAGTTACCATGTACTT 780
| ||||| |||||| ||||| || |||||| ||||||||| ||||| |||||||||| ||
Sbjct 304 AGATTGTTGCACCATATATCCATTGTCTCATATTGAGAAAATCTCATTTACCATGTA-TT 362
Query 781 TT-GTTGATCTCTCGTCTTTAGCCGAAGCTAGACTGGACATTTGCATTGTCCCAATAACC 839
|| || ||| |||||||||||| |||||||||| || |||| |||| || | || | |
Sbjct 363 TTAGTCGATGTCTCGTCTTTAGTCGAAGCTAGATTGAACATCTGCACTGGCTCACTTTCA 422
Query 840 CGAACCTTCAAGGCTGATTTTCTTCAAGACATGGTACTAAAGATGTTAGAAAAGTTGCAG 899
||| || ||| ||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 423 AAAACAATCGAGGTTGATTCTCTTCAAGTCATGGTTCTAAAGATGTTAGAAAAGTTGCAC 482
Query 900 AATGTAGAGAAGCTTACTTTTGGGGGAAACTTT-CTT 935
|| || ||||||||||||||||||| ||| ||| |||
Sbjct 483 AACGTGGAGAAGCTTACTTTTGGGGTAAA-TTTGCTT 518
> AT5G02930.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:682577-684480 FORWARD LENGTH=1410
Length=1410
Score = 121 bits (65), Expect = 2e-26
Identities = 115/139 (83%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 96 GTAGACTTAATAAGCTCTTTACCTGATTCTATCCTCCAACATATCCTCTCCTTTATTCCG 155
||||||| ||| ||| | |||| || || | |||||||||||| |||||| |||||||
Sbjct 79 GTAGACTCAATCAGCGATCTACCCGACGCTGTTCTCCAACATATCTTCTCCTATATTCCG 138
Query 156 ACCA-AGTTAGCCATCAGAGCCTCCCTCTTGTCCAAACGATGGAGACATGTATGGTGCGA 214
| || |||| || |||||| |||| |||||||||||||||||||||||||||||| |||
Sbjct 139 A-CAGAGTTGGCGATCAGAACCTCTGTCTTGTCCAAACGATGGAGACATGTATGGTCCGA 197
Query 215 TATACCTTC-TCTCTCCTT 232
| |||| | |||||||||
Sbjct 198 GACACCT-CATCTCTCCTT 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70732567905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5