BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932546
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24720.1 | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor 2.... 1290 0.0
AT2G24710.1 | Symbols: ATGLR2.3, GLR2.3 | glutamate receptor 2.... 1166 0.0
AT2G24750.1 | Symbols: | pseudogene, similar to Avr9/Cf-9 rapi... 329 4e-89
> AT2G24720.1 | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor
2.2 | chr2:10522783-10525840 REVERSE LENGTH=2763
Length=2763
Score = 1290 bits (698), Expect = 0.0
Identities = 1176/1402 (84%), Gaps = 51/1402 (4%)
Strand=Plus/Plus
Query 28 CTTTATCTACTTGGAAAGATCATCTTAAACCCATTATATGGCCTGGAAAGGTTGATGT-T 86
||||||| |||||| |||||||||||||| || |||||||||||| ||| | | | |
Sbjct 1262 CTTTATCCACTTGGCCAGATCATCTTAAACATATAATATGGCCTGGAGAGGCCG-TTTCT 1320
Query 87 GTTCCGAAAGGATGGGAGATCCCAACAAATGGGAAGAAGTTGCGCATCGGAGTTCCAAAG 146
||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||
Sbjct 1321 GTTCCGAAAGGATGGGAGATCCCGACTAATGGGAAGAAGTTGCGCATTGGAGTTCCCAAG 1380
Query 147 AGAAGT-GGTTACACCAATCTCGTGAAGGTCACAAGGGATCCTATCACAAACTCAGTGAT 205
|||| | |||| ||| ||||||||||||||||||||||||||||||| || ||| | |
Sbjct 1381 AGAA-TCGGTTTCACTGATCTCGTGAAGGTCACAAGGGATCCTATCACCAATTCAACGGT 1439
Query 206 AGTCTCAGGTTTGTGCATAGATATCTTAGAGGCTGTGATTCGAGCAATGCCTTATGATGT 265
|||| |||||| ||||||||| | || ||||||||||||| ||||||||||||||| ||
Sbjct 1440 AGTCAAAGGTTTTTGCATAGATTTTTTTGAGGCTGTGATTCAAGCAATGCCTTATGACGT 1499
Query 266 CTCCTATGAGTTATTTCATTTTGAGAAACCCAATGGTGAACCAGCCGGTGATTACAACGA 325
||| |||||||| |||| |||||| |||||||| ||||||||||||||| || |||||||
Sbjct 1500 CTCTTATGAGTTCTTTCCTTTTGAAAAACCCAACGGTGAACCAGCCGGTAATCACAACGA 1559
Query 326 ATTGGTGTACCAAGTGTACCTCGGG-AGATATGACGCAGTTGTGGGAGATATAACCATAC 384
||||| ||||||||||||||||| | || ||| || || || ||||||| ||||||||
Sbjct 1560 CTTGGTCCACCAAGTGTACCTCGGGCA-ATTTGATGCCGTGGTCGGAGATACAACCATAC 1618
Query 385 TGGCGAACAGGTCCGCTTATGTCGACTTCACATTTCCATTCCTTAAGTCAGGCGTGGGAT 444
|||||||||||||| ||| ||| ||||| ||| | |||||| | || ||||| |||||||
Sbjct 1619 TGGCGAACAGGTCCTCTTTTGTTGACTTTACACTCCCATTCATGAAATCAGGTGTGGGAT 1678
Query 445 TGATTGTCCCAATGAAAGACGAAGTGAAGAGAAAC-AGTATCAGTTTCTTGATGCCTTTA 503
|||| |||||| ||||||| |||||||| ||| || | | |||| ||||||| |||||
Sbjct 1679 TGATCGTCCCATTGAAAGATGAAGTGAAAAGAGACAAAT-TCAGCTTCTTGAAACCTTTG 1737
Query 504 AC-ATGGAAGTTGTGGGTGACTTCCTTTGTCTTTTTCTTCCTTA-TTGGCTTTACTGTCT 561
| || ||| | ||| |||| |||| ||||||||||||| || |||| ||| ||| |
Sbjct 1738 TCAATCGAA-CTATGGTTGACAACCTTAGTCTTTTTCTTCC-TAGTTGGAATTAGTGTAT 1795
Query 562 GGGCTCTTGAACATAGGATTAATCCGGACTTTCGTGGACCAGCTAATTACCAAGCTAGTA 621
|| |||||||||||||| | ||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1796 GGACTCTTGAACATAGGGTCAATTCGGACTTCCGTGGACCAGCTAATTACCAAGCTAGTA 1855
Query 622 CCATATTTTGGTTTGCCTTCTCTACCATGGTTTTTGCTCCAAGGGAAAGAGTA-TACAGC 680
|||| || ||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 1856 CCATCTTCTGGTTTGCCTTCTCTACCATGGTTTTTGCTCCAAGAGAAAGAGTGCTT-AGC 1914
Query 681 TTTGGAGCTAGGCTTC-TAGTTATCACATGGTACTTCATTGTTCTTGTGTTGACTCAAAG 739
|| || || ||| | | | ||| |||||||||||||| | |||| ||||| ||||| ||
Sbjct 1915 TTCGGGGCAAGG-TCCCTTGTTGTCACATGGTACTTCGTCCTTCTCGTGTTAACTCAGAG 1973
Query 740 TTACACAGCCAGTTTGGCGTCAG-TTTTGACATCACAAAAACTAAATCCAACCATAACCA 798
||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 1974 TTACACAGCCAGTTTGGCGTC-GCTTTTGACATCACAACAACTAAATCCAACCATAACCA 2032
Query 799 GCATGAGTAGCTTACTTCAAAGAGGAGAAAGAGTGGGTTATCAGAGA-CAATCCTTCATC 857
||||||||||||| ||||| |||||||||| |||||||||||||||| || |||||||||
Sbjct 2033 GCATGAGTAGCTTGCTTCATAGAGGAGAAACAGTGGGTTATCAGAGAACA-TCCTTCATC 2091
Query 858 TTTGGAAAGCTTAATGACACAGGTTTCTCGA-AATCTAGCCTTGTGCCCTTTGATACCAC 916
||||||||||||| || ||||||||| | | |||||||||||||||||||||||||| |
Sbjct 2092 CTTGGAAAGCTTAACGAAACAGGTTTCCC-ACAATCTAGCCTTGTGCCCTTTGATACCGC 2150
Query 917 AGAAGAATGCCATGAGCTTCTCAGAAATGG-C-ACA----G-TG-T----CTGCAGCTTT 964
|||||||||| |||||||||| | ||| || | | | | || | ||||||||||
Sbjct 2151 AGAAGAATGCGATGAGCTTCTGAAAAAAGGACCAAAAAATGGTGGTGTGGCTGCAGCTTT 2210
Query 965 TTTGGAAACACCTTACTTGAGACTCTTTCTTGGACAATATTGCAACACTTATAAAATGGT 1024
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2211 CTTGGGAACACCTTACGTGAGACTCTTTCTTGGACAATATTGCAACACTTATAAAATGGT 2270
Query 1025 TGAAGAACCATTCAACGTTGATGGATTCGGTTTTGTTTTTCCAATCGGATCACCTTTGGT 1084
||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 2271 TGAAGAACCCTTCAATGTTGATGGATTCGGCTTTGTGTTTCCAATCGGATCACCTCTGGT 2330
Query 1085 GGCCGATGTTTCAAGGGCCATCTTAAAAGTAGCAGAGTCACCAAAAGCAATGGAGCTTGA 1144
||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||
Sbjct 2331 GGCCGATGTTTCAAGGGCCATCTTAAAAGTAGCAGAGTCTCCAAAGGCAGTGGAGCTCGA 2390
Query 1145 G-AGCACATGGTTCAAGAAGAAAGAAGAAAGTTGTCCAGACCCAGTCGTTAATCCAGATC 1203
| | | | |||||||||||||||||| |||||||||| || ||||| |||||||||
Sbjct 2391 GCA-CGCTTGGTTCAAGAAGAAAGAACAAAGTTGTCCTGATCCAGTTACCAATCCAGATT 2449
Query 1204 CAAATCCGTCTAC-ATCATT-TAGGCAACTCGGCGTAGATAGTTTCTGGCTTCTGTTTCT 1261
||||||| || | | | || || |||||||||| ||||||||| || |||||||
Sbjct 2450 CAAATCCAACTGTTACCGCTATA--CAGCTCGGCGTAGGCAGTTTCTGGTTTTTGTTTCT 2507
Query 1262 TGTTGCT-TTTGTTATATGTGTTCTAACCCTTGGCAAAT-CATTATTCTTTTTCCTAAAG 1319
||||| | |||||| | || |||||| | || || |||| || ||||| ||||||| |
Sbjct 2508 TGTTG-TGTTTGTTGTCTGCGTTCTAGCACTCGGAAAATTCAC-ATTCTGTTTCCTATGG 2565
Query 1320 AAGCCTACACATGTTGATGGCTTA-TGGAAGGAGTTCCAAAAACCAGACAATGATTCGTA 1378
||| | | | | | || | || ||||| ||||| | ||||| ||||| || |||||
Sbjct 2566 AAGACAA-A-AGG--GAAAGATTTGTGGAAAGAGTTTCTAAAACGAGACACCGACTCGTA 2621
Query 1379 CATCAACAA-AGTCGAGAAATG 1399
||||||| | | | ||||||||
Sbjct 2622 CATCAACGACA-TAGAGAAATG 2642
> AT2G24710.1 | Symbols: ATGLR2.3, GLR2.3 | glutamate receptor
2.3 | chr2:10516880-10520549 REVERSE LENGTH=2688
Length=2688
Score = 1166 bits (631), Expect = 0.0
Identities = 1068/1275 (84%), Gaps = 46/1275 (4%)
Strand=Plus/Plus
Query 18 AGCATGAGCGCTTTATCTACTTGGAAAGATCATCTTAAACCCATTATATGGCCTGGAAAG 77
||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 1252 AGCATAAGCGCTTTATCTACTTGGAAAGATCATCTTAAACACATTGTATGGCCTGGAGAG 1311
Query 78 GTTGATGT-TGTTCCGAAAGGATGGGAGATCCCAACAAATGGGAAGAAGTTGCGCATCGG 136
| ||| | |||||||||||||||| ||||||| || || |||||||||||||| || ||
Sbjct 1312 GCGGAT-TCTGTTCCGAAAGGATGGCAGATCCCGACTAAGGGGAAGAAGTTGCGTATTGG 1370
Query 137 AGTT-CCAAAGAGAAGTGGTTACACCAATCTCGTGAAGGTCACAAGGGATCCTATCACAA 195
|||| ||||| |||| || ||||| |||| ||||| ||||||||||||||||| || |
Sbjct 1371 AGTTCCCAAA-AGAACCGGCTACACTGATCTTGTGAAAGTCACAAGGGATCCTATTACCA 1429
Query 196 ACTC-AGTGATAGTCTCAGGTTTGTGCATAGATATCTTAGAGGCTGTGATTCGAGCAA-T 253
| || | || ||||| ||||||| ||||||||| |||| |||||||||||||||| || |
Sbjct 1430 ATTCAACTG-TAGTCACAGGTTTTTGCATAGATTTCTTTGAGGCTGTGATTCGAG-AACT 1487
Query 254 GCCTTATGATGTCTCCTATGAGTT-ATTTCATTTTGAGAAACCCAATGGTGAACCAGCCG 312
||||||||| ||||| |||||||| | | | ||| || |||||| | || || ||||||
Sbjct 1488 GCCTTATGACGTCTCATATGAGTTCA-TACCTTTCGAAAAACCCGACGGAAAAACAGCCG 1546
Query 313 GTGATTACAACGAATTGGTGTACCAAGTGTACCTCGGGAGATATGACGCAGTTGTGGGAG 372
|| |||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1547 GTAATTACAACGACTTGGTCTACCAAGTGTACCTCGGGAGATATGATGCGGTTGTGGGAG 1606
Query 373 ATATAACCATACTGGCGAACAGGTCCGCTTATGTCGACTTCACATTTCCATTCCTTAAGT 432
||| ||||||| ||| ||||||||| |||| |||||||||||||| ||||| |||| |
Sbjct 1607 ATACAACCATATTGGTGAACAGGTCTTCTTACGTCGACTTCACATTCCCATTTATTAAAT 1666
Query 433 CAGGCGTGGGATTGATTGTCCCAATGAAAGACGAAGTGAAGAGAAAC-AGTATCA-GTTT 490
|||| || |||||||| || ||||| |||| ||| |||||| || | ||| | |||
Sbjct 1667 CAGGTGTCGGATTGATCGTTGAAATGACAGACCCAGTAAAGAGAGACTA-TAT-ACTTTT 1724
Query 491 CTTGATGCCTTTAACATGGAAGTTGTGGGTGACTTCCTTTGTCTTTTTCTTCCTTATTGG 550
| ||| ||||| ||||||| | ||| ||||||||||| ||| |||||||||| | ||
Sbjct 1725 CATGAAACCTTTGTCATGGAAACTATGGTTGACTTCCTTTATCTCTTTCTTCCTTGTCGG 1784
Query 551 CTT-TACTGTCTGGGCTCTTGAACATAGGATTAATCCGGACTTTCGTGGACCAG-CTA-A 607
|| |||||| |||| ||| ||| ||| | ||||||||||||| ||||||| | ||| |
Sbjct 1785 -TTGTACTGTATGGGTTCTCGAATATAAGCGTAATCCGGACTTTAGTGGACC-GCCTAGA 1842
Query 608 TTACCAAGCTAGTACCATATTTTGGTTTGCCTTCTCTACCATGGTTTTTGCTCCAAGGGA 667
|| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 1843 TT-CCAAGCTAGTACCATCTGTTGGTTTGCCTTCTCTACCATGGTTTTTGCTCCAAGAGA 1901
Query 668 AAGAGTATACAGCTTT-GGAGCTAGG-CTTCTAGTTATCACATGGTACTT-CATTGTTCT 724
|||||||| |||||| || || ||| | || |||||| |||||||||| | | |||||
Sbjct 1902 AAGAGTATTTAGCTTTTGG-GCGAGGGCC-CTGGTTATCGCATGGTACTTTC-TCGTTCT 1958
Query 725 TGTGTTGACTCAAAGTTACACAGCCAGTTTGGCGTCAG-TTTTGACATCACAAAAACTAA 783
||||| || || ||||||||||| |||||||| || | ||||||||||||| ||| |||
Sbjct 1959 CGTGTTAACCCAGAGTTACACAGCGAGTTTGGCATC-GCTTTTGACATCACAGAAATTAA 2017
Query 784 ATCCAACCATAACCAGCATGAGTAGCTTACTTCAAAGAGGAGAAAGAGTGGGTTATCAGA 843
||||||| ||||||||||||||||| || ||| ||| |||||||| |||||||||||||
Sbjct 2018 ATCCAACAATAACCAGCATGAGTAGTTTGCTTGAAAAAGGAGAAACAGTGGGTTATCAGC 2077
Query 844 GA-CAATCCTTCATCTTTGGAAAGCTTAATGACACAGGTTTCTCGAAATCTAGCCTTGTG 902
|| || ||||||||| ||||||||||||| || | ||||||| || ||||||||||||||
Sbjct 2078 GAACA-TCCTTCATCCTTGGAAAGCTTAAAGAAAGAGGTTTCCCGCAATCTAGCCTTGTG 2136
Query 903 CCCTTTGATACCACAGAAGAATGCCATGAGCTTCTCAG-AAATGG-C-ACA----G-TG- 953
||||||||||| |||||||||| |||||||||| || ||| || | | | | ||
Sbjct 2137 CCCTTTGATACTGCAGAAGAATGTGATGAGCTTCTAAGTAAA-GGACCAAAAAAAGGTGG 2195
Query 954 T--CT--GCAGCTTTTTTGGAAACACCTTACTTGAGACTCTTTCTTGGACAATATTGCAA 1009
| || | |||||| ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 2196 TGTCTCTGGAGCTTTCTTGGAAATACCTTACTTGAGACTCTTTCTTGGACAGTTTTGCAA 2255
Query 1010 CACTTATAAAATGGTTGAAGAACCATTCAACGTTGATGGATTCGGTTTTGTTTTTCCAAT 1069
||| || ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 2256 CACATACAAAATGGTTGAAGAACCCTTCAATGTTGATGGATTCGGCTTTGTTTTTCCAAT 2315
Query 1070 CGGATCACCTTTGGTGGCCGATGTTTCAAGGGCCATCTTAAAAGTAGCAGAGTCACCAAA 1129
|||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2316 CGGATCACCTCTAGTGGCCGATGTTTCAAGGGCCATCTTAAAAGTAGCAGAGTCTCCAAA 2375
Query 1130 AGCAATGGAGCTTGAGAGCACATGGTTCAAGAAGAAAGAAGAAAGTTGTCCAGACCCAGT 1189
||||||||||| ||| | |||||||||||||||||||| |||| ||||| || ||| |
Sbjct 2376 GGCAATGGAGCTCGAGCGTGCATGGTTCAAGAAGAAAGAACAAAGCTGTCCTGATCCAAT 2435
Query 1190 CGTTAATCCAGATCCAAATCCGTCTA-CATCATTTAGGCAACTCGGCGTAGATAGTTTCT 1248
|||||||||||||||||| ||| || | | |||||| || | | |||| |||||||
Sbjct 2436 TACTAATCCAGATCCAAATCCCTCTTTCACC-TCTAGGCAGCTTGACATAGACAGTTTCT 2494
Query 1249 GGCTTCTGTTTCTTG 1263
| |||||||| |||
Sbjct 2495 TGTTTCTGTTTGTTG 2509
> AT2G24750.1 | Symbols: | pseudogene, similar to Avr9/Cf-9 rapidly
elicited protein 141, similar to GB:AAB61068; blastp match
of 43% identity and 5.0e-152 P-value to GP|30013669|gb|AAP03877.1||AY220478
Avr9/Cf-9 rapidly elicited protein 141
{Nicotiana tabacum} | chr2:10539001-10545985 FORWARD LENGTH=6985
Length=6985
Score = 329 bits (178), Expect = 4e-89
Identities = 272/316 (86%), Gaps = 11/316 (3%)
Strand=Plus/Plus
Query 354 TATGACGCAGTTGTGGGAGATATAACCATACTGGCGAACAGGTCCGCTTATGTCGACTTC 413
|||||||| ||||||||||||| || ||| |||| || |||||| ||||||||||||||
Sbjct 5437 TATGACGCGGTTGTGGGAGATACGACTATATTGGCAAATAGGTCCTCTTATGTCGACTTC 5496
Query 414 ACATTTCCA-TTCCTTAAGTCAGGCGTGGGATTGATTGTCCCAATGA-AAGACGAAGT-G 470
||| ||||| || | ||| || || ||||||||||||||||| | | ||||| |||| |
Sbjct 5497 ACA-TTCCATTTAC-TAAATCTGGTGTGGGATTGATTGTCCCCGT-AGAAGACCAAGTGG 5553
Query 471 -AAGAGAAACAGTATCAGTTTCTTGATGCCTTTAACATGG-AAGTTGTGGGTGACTTCCT 528
||||| |||||||||||||||||| ||| ||||||||| || || ||| |||||||||
Sbjct 5554 CAAGAG--ACAGTATCAGTTTCTTGAAGCCCTTAACATGGAAACTT-TGGATGACTTCCT 5610
Query 529 TTGTCTTTTTCTTCCTTATTGGCTTTACTGTCTGGGCTCTTGAACATAGGATTAATCCGG 588
|| |||| |||||||| ||||| |||||||| |||| | |||||||||||||||||||||
Sbjct 5611 TTTTCTTCTTCTTCCTCATTGGTTTTACTGTTTGGGTTATTGAACATAGGATTAATCCGG 5670
Query 589 ACTTTCGTGGACCAGCTAATTACCAAGCTAGTACCATATTTTGGTTTGCCTTCTCTACCA 648
||||||| ||||||||||| ||||||| |||||| || || ||||||||||| |||||||
Sbjct 5671 ACTTTCGCGGACCAGCTAAGTACCAAGTTAGTACAATCTTCTGGTTTGCCTTTTCTACCA 5730
Query 649 TGGTTTTTGCTCCAAG 664
||||||||||||||||
Sbjct 5731 TGGTTTTTGCTCCAAG 5746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73644199515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5