BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932553
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 592 4e-168
AT2G24735.1 | Symbols: | Unknown gene | chr2:10528064-10533887... 76.8 5e-13
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 592 bits (320), Expect = 4e-168
Identities = 926/1202 (77%), Gaps = 108/1202 (9%)
Strand=Plus/Plus
Query 121 ACTGGTCTCTTCTCCCTGAAGAGCTACTGAGA-ATTATCTCTAAGTATCTGGAGGACAAG 179
||||||||| ||||| ||||||||||| | | ||||||| ||| |||| | ||| |
Sbjct 258 ACTGGTCTCAGCTCCCGGAAGAGCTACTCA-ACCTTATCTCCAAGAATCT--A-GAC-A- 311
Query 180 GACTATTGTTTCGATGTGGTTCATGCTCGCTCTGTTTG-CAGTTCTTGGCGAT-C-TATC 236
|| ||||| ||||| ||||||||||| ||| |||| | |||| ||||||| | ||
Sbjct 312 -AC---TGTTTTGATGTCGTTCATGCTCGATCTATTTGTC-GTTCGTGGCGATCCGCAT- 365
Query 237 TTCCCTTTTCCTTCTTGCCTAT-TACGCCAAAGTTATTCTCTTCCCTCCTTTGCCAAGTT 295
||||| ||||||||| || ||| || || |||||| ||||||||| | ||||| |||||
Sbjct 366 TTCCC-TTTCCTTCTAGCTTATCAAC-CCTAAGTTACTCTCTTCCCACGTTTGCTAAGTT 423
Query 296 CCC--TCGCAAAACAAAAGACTTGTGCACCCTCGAGAAGATCCCTTTGTTCTTGTTTAGA 353
||| | | || | ||||||||||| || ||| ||||||||| | ||| | ||||||
Sbjct 424 CCCATTAG-TAAGC-AAAGACTTGTGTACACTCAAGAAGATCCAAATCTTCCTCTTTAGA 481
Query 354 GTTCG-TGCTCCTGCATCGC--AT-TA--TGAGTATTTTCTCGGA-GATTTGGGCCCGGA 406
| ||| | ||||| | || || || ||||||||||| ||| || | | || ||
Sbjct 482 GCTCGAAAC-CCTGC-T-GCTGATATACCCGAGTATTTTCTTGGAGGA-ATAGACCAAGA 537
Query 407 TAAGTCAGAA-GATCGTATGGAGCTTCCGTCTCCTCTTCAATGTTCAGTGAAATAT-AAG 464
| ||||| || |||| |||||| ||||| ||||||||||||||||| |||||| | |||
Sbjct 538 TCAGTCA-AATGATCATATGGAACTTCCATCTCCTCTTCAATGTTCTGTGAAA-GTGAAG 595
Query 465 ATACCAGGAA-CTGATCCAACCTTAATGAACATGCTAGACTGCCAGATCATCCCTCTGGG 523
| ||| || |||||||| ||| |||||||||| |||| ||||||||| ||| | ||
Sbjct 596 TTCCCA-CAATCTGATCCATTCTTGGTGAACATGCTTGACTACCAGATCATTCCTTTAGG 654
Query 524 CCATCAGTACAGGATGATCGGTTGGTATCCTGACTCATTGGCAACA-AGTTTCAG-AGGC 581
| ||| |||| |||||||||||| ||||||| |||||||||| | ||| | | ||||
Sbjct 655 CTTTCAATACATAATGATCGGTTGGGATCCTGAATCATTGGCAA-ATGGTTAC-GTAGGC 712
Query 582 GTGGCTGTTCTTCCACTAAACAAGCagggaggagga-ggaggaggaggaggaTTTGTTGT 640
|| ||| ||||||| | | ||| | | || | |||||| || || ||| |||||
Sbjct 713 GTTGCTTTTCTTCCGGT--A-AAG-A---A-GA--ACGGAGGA-GACGA--ATTCGTTGT 759
Query 641 GCTT-ATCGGCTATTC-TCATGGTTTGTTGGTGTTAAGAAGTGCTGAAAAGAGATGGATG 698
|||| || |||| | | || |||||||||||| |||||| |||||| ||| ||||||
Sbjct 760 GCTTCTTC-GCTA-CCGTAATCATTTGTTGGTGTTGAGAAGTTCTGAAATGAGGTGGATG 817
Query 699 -CGGCTTGAGCAATCCTCAATAGC-TGACTGCTCGGATATCGTCACTTTTAGAGGCAGAT 756
|| | || || |||| || || | | ||| || | | |||| ||||||||| ||||
Sbjct 818 AAGG-TCAAGAAAACCTCCATTGCTTCA-TGCAAGGGTTTAGTCAGTTTTAGAGGTAGAT 875
Query 757 TTTATGT-AGTCTTTCTTAACGGGGACATTTTCGTTATCGATCCTTATTC-TCTGGAAGC 814
||||||| | | ||||||||||||||||||| |||| ||||||||||||| | ||||| |
Sbjct 876 TTTATGTAACT-TTTCTTAACGGGGACATTTACGTTTTCGATCCTTATTCGT-TGGAA-C 932
Query 815 A-ACTCCCCTTATGCCAC-CGGAGCTTCTGAACTCTGGTTCATGCAATTATCTGGTTCCA 872
| |||| ||| ||||| | | |||| |||| | || | | |||| |||||| |||||
Sbjct 933 AGACTCTCCTGATGCC-CTCAGAGCCTCTG--CGCTCG---A-GCAAGTATCTGATTCCA 985
Query 873 TGTGGCAATGATGAACTTTTCCTGGTTGTG--G-T-AA-TCA--TCC-CAAGATCGTCTG 924
||||| |||||| ||||||||||||| | | | || || ||| ||| | | ||
Sbjct 986 AATGGCAGTGATGAGCTTTTCCTGGTTGAGAAGTTCAACCCATTTCCTGAAGCT-G-ATG 1043
Query 925 TATTAGATTTTG-GTAAGTTAACATGTAGAGTGAGTAAGCTAGATGAGGAGGCTGGTGAA 983
|||| || |||| || ||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 1044 TATTGGA-TTTGAGTCGGTTCGCATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTCAA 1102
Query 984 TGGGTTGAGGTCAGT-GATTTGGGAGACCGTGTTTTGTTCATTGGAAACCAGGGAAATGT 1042
||||||||||| | | ||||||||||||||||| ||||| |||||| || ||||||||
Sbjct 1103 TGGGTTGAGGTGA-TCGATTTGGGAGACCGTGTGTTGTTTATTGGACACTTTGGAAATGT 1161
Query 1043 -TGCTTGCTCGGCTAAGGAGCTTCCTGATGGTTGTGGTGTGAGCGGGAACTCAATTTTGT 1101
||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1162 CTGC-TGCTCAGCTAAGGAGCTTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGT 1220
Query 1102 TCACTGATGGGCTTGGCT-TCCAAAATTTTGCCTATAAATATGGAGTACACACAGGAAAT 1160
|||| ||| || |||| | || ||| ||||||||||| |||||||| |||||||
Sbjct 1221 TCACCAATGAGCCAGGCTATGTAACGTTT-GCCTATAAATACGGAGTACATACAGGAAGG 1279
Query 1161 GCGGAGGACGACCTCAGTCTGTGGAGATTCTCAAGAGAGAATCCTGTGGA-TGTTC-TCA 1218
||||| ||||| || | | | ||||||||||||||||| ||| | | | | || || |||
Sbjct 1280 GCGGAAGACGAACTTAATATTTGGAGATTCTCAAGAGA-AATAC-GAGTAATGATCGTCA 1337
Query 1219 ACAAATCTCCTCCGGTGGTGGCTCTCCGGATTGAGCG-CTAAGCCGTAAAATCTTGCCTT 1277
||| || |||| | || ||||||| ||| ||||| | | |||| | ||||||| || ||
Sbjct 1338 ACACATTTCCT--GTTG-TGGCTCTTCGGCTTGAGAGGC-AAGCTG-AAAATCTCGCTTT 1392
Query 1278 GG 1279
||
Sbjct 1393 GG 1394
> AT2G24735.1 | Symbols: | Unknown gene | chr2:10528064-10533887
FORWARD LENGTH=591
Length=591
Score = 76.8 bits (41), Expect = 5e-13
Identities = 51/56 (91%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1 ATTGCATCAATTAGCAAAACATGGCACCGAGAAAGAAGACACCAGCCATGATTTGG 56
|||||| |||| ||||||||||||||||||||||||||||| || | |||||||||
Sbjct 109 ATTGCAGCAATCAGCAAAACATGGCACCGAGAAAGAAGACATCATCTATGATTTGG 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5