BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932559
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 438 3e-122
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 438 bits (237), Expect = 3e-122
Identities = 616/790 (78%), Gaps = 61/790 (8%)
Strand=Plus/Plus
Query 2 AGAT-AGCTCAGAA-GATCGTATGGAGCTTCCGTCTCCTCTTCAATGTTCACTAAAATTG 59
|||| || ||| || |||| |||||| ||||| ||||||||||||||||| | ||| ||
Sbjct 535 AGATCAG-TCA-AATGATCATATGGAACTTCCATCTCCTCTTCAATGTTCTGTGAAAGTG 592
Query 60 AAAATCCCAGGATCTGTTCCAACCTTGATGAACATGCTTGACTGCCAGATCCTCCCTCTG 119
|| ||||| ||||| |||| |||| ||||||||||||||| ||||||| | ||| |
Sbjct 593 AAGTTCCCACAATCTGATCCATTCTTGGTGAACATGCTTGACTACCAGATCATTCCTTTA 652
Query 120 GGCTTTCAATACAGAATTATAGGTTGGGATCCTG-A--A---G--AACAG--AC--A-AC 166
||||||||||||| ||| || ||||||||||||| | | | || | || | |
Sbjct 653 GGCTTTCAATACATAATGATCGGTTGGGATCCTGAATCATTGGCAAATGGTTACGTAGGC 712
Query 167 AG-T--TTTTCTTCCGCTAAACAAGGATGGA--AGA-GAATTCGTTGTGCTTC-TCAACT 219
| | |||||||||| |||| ||| | ||| ||| |||||||||||||||| || ||
Sbjct 713 -GTTGCTTTTCTTCCGGTAAAGAAGAACGGAGGAGACGAATTCGTTGTGCTTCTTC-GCT 770
Query 220 ACTC-TTACCTTTTACTGGCATTAACAAGTGCTGAAATGAGGTGGAAGTTGGTTATG--A 276
|| | | | | ||| ||| || | |||| ||||||||||||||| | ||| | | |
Sbjct 771 AC-CGTAATCATTTGTTGGTGTTGAGAAGTTCTGAAATGAGGTGGATGAAGGTCAAGAAA 829
Query 277 ACGTCCCAAATACATCATGCACGGAG-TTAGTCACTTTTCGAGGCAGATTTTATGCAGCC 335
|| | || | | | ||||||| || | ||||||| |||| |||| |||||||||| | |
Sbjct 830 ACCT-CC-ATTGCTTCATGCAAGG-GTTTAGTCAGTTTTAGAGGTAGATTTTATGTAACT 886
Query 336 TTTCTTCACGGGGAGGTTTGCATTATCGATCCTTGTTCGCTGGAAGC-GACTAGCCTGAT 394
|||||| ||||||| ||| | || ||||||||| |||| ||||| | |||| ||||||
Sbjct 887 TTTCTTAACGGGGACATTTACGTTTTCGATCCTTATTCGTTGGAA-CAGACTCTCCTGAT 945
Query 395 GCCGTCTGAGCCTCTGCGCTCAAGCTATTACCTGATTCCATCTGGCAATGATGAACtttt 454
||| || |||||||||||||| ||| | || ||||||||| ||||| |||||| |||||
Sbjct 946 GCCCTCAGAGCCTCTGCGCTCGAGCAAGTATCTGATTCCAAATGGCAGTGATGAGCTTTT 1005
Query 455 tttGGTTGAG--G-T-AA-TCGTTT-CT--A--TG--GAATT-AACTTTCAATCTGTTCA 501
|||||||| | | || | ||| || | || | ||| | ||| | || ||||
Sbjct 1006 CCTGGTTGAGAAGTTCAACCCATTTCCTGAAGCTGATGTATTGGA-TTTGAGTCGGTTCG 1064
Query 502 AATGTAGAGTGAGTAGGCTAGATGAGAAAGCTGGAAAATGGGTTGTGGTCAGAGATTTGG 561
||||||||||||||||||||||||| | ||||| ||||||||| ||| | |||||||
Sbjct 1065 CATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGGTGATCGATTTGG 1124
Query 562 GAGACCGTGTATTGTTTATTGGTGGACAGTTTGGAAATGTCTGCTGCTC-GTCTAAGGAG 620
|||||||||| ||||||| | |||||| |||||||||||||||||||| | ||||||||
Sbjct 1125 GAGACCGTGTGTTGTTTA-T--TGGACACTTTGGAAATGTCTGCTGCTCAG-CTAAGGAG 1180
Query 621 CTTCCTGATGGTTGTGGTGTGAGTGGAAACTCAATTTTGTTCACCTTTGGGCCACGCAAT 680
|||||||||||||||||||||||||| |||||||||||||||||| || |||| || ||
Sbjct 1181 CTTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGTTCACCAATGAGCCAGGCTAT 1240
Query 681 GTAAC-TT-GCACCTATAAATATGGAGTGCATACAGGAAACTAGGAAGACGACCTCAAT- 737
||||| || || | |||||||| ||||| |||||||||| ||||||||| || |||
Sbjct 1241 GTAACGTTTGC-C-TATAAATACGGAGTACATACAGGAAGGGCGGAAGACGAACTTAATA 1298
Query 738 TGGTGGAGAT 747
| |||||||
Sbjct 1299 TT-TGGAGAT 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40991063952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5