BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932560
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00260.1 | Symbols: MEE45 | Transcriptional factor B3 family... 1062 0.0
AT2G24645.1 | Symbols: | Transcriptional factor B3 family prot... 682 0.0
AT2G24748.1 | Symbols: | pseudogene of transcriptional factor ... 496 4e-139
AT2G12170.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 322 8e-87
AT2G12160.1 | Symbols: | pseudogene, hypothetical protein | ch... 274 2e-72
> AT4G00260.1 | Symbols: MEE45 | Transcriptional factor B3 family
protein | chr4:114971-117051 FORWARD LENGTH=1587
Length=1587
Score = 1062 bits (575), Expect = 0.0
Identities = 972/1156 (84%), Gaps = 57/1156 (5%)
Strand=Plus/Plus
Query 219 CAACATTTCTTCAAGCCTCTTCTTCCCGGATTCCACAG--TCACTTGACAATTCCTGTGG 276
|||||||||||||||||||||||||| || |||||| | || ||||||||||||||| |
Sbjct 10 CAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCAC-GCCTC-CTTGACAATTCCTGTAG 67
Query 277 CTTTCTTCTTGAAGAATATAGAAGGAAGACATGAGCAGAAGACGGCGGAGCTGAGATCAG 336
| |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 68 CCTTCTTCTTGAAGTATATAGAAGGAAGATATGAGCAGAAGACGGCGAAGCTGAGATCAG 127
Query 337 ACGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGACTCACTGACGGTTGGA 396
|||||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 128 ACGCGTCAAAGAGAACTTGGGAAGTGAAGATAGATGGCCAGAGACTCACCGACGGTTGGA 187
Query 397 AAGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTGGTGTTT-AGACAAGAG 455
||||||||||| |||| |||||||||||||||||||||||||| || ||| |||||||||
Sbjct 188 AAGAGTTTGCTGTCTCACATGATCTTCGAATCGGTGACATTGTTGT-TTTCAGACAAGAG 246
Query 456 AGAGA-TATGTG-TTTCCACGTTACAATGTTGGGACCTAGTTGTTGTGAGATTCAATATG 513
|| || | || | |||||| || ||| ||||||||||||||||||||| |||||||||||
Sbjct 247 AGTGACT-TG-GCTTTCCATGTAACACTGTTGGGACCTAGTTGTTGTGGGATTCAATATG 304
Query 514 GTTCGTGTTTAGAC-AACAAGAACAACCTCGG-GA--AG--ATTCAAAG-GAAGAAGAAT 566
||||||||| || | || |||||||||||||| || || | |||| |||| |||||
Sbjct 305 GTTCGTGTTCAGTCGAA-AAGAACAACCTCGGTGACGAGAAAAAGAAAGTGAAGGAGAAT 363
Query 567 CCAAGA-AGAGAAACAGAGTCTTCGTCACTAGATCCTTCTTGTTTTGTGGCTAATGTCAC 625
|||| | ||||| |||||||||| |||| |||||| |||||||||||||||||||| |
Sbjct 364 CCAA-ATGGAGAAGCAGAGTCTTCTTCACGAGATCCCTCTTGTTTTGTGGCTAATGTTGC 422
Query 626 GGTTTCGAGTCTACGCGATGAC-AGACTGA-ATCTTCCAAGAAGTTTTGTGAGGGAAAAT 683
| |||||||||||| ||||| || ||| || ||||||| ||||||||||||| |||
Sbjct 423 GCCTTCGAGTCTACGTTATGACTTGA-TGAGAT-TTCCAAGGGGTTTTGTGAGGGATAAT 480
Query 684 GGTCTAGACACAAGATGTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGAACATGG-AC 742
||| ||| | ||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 481 GGTGTAG--TC-GGATCTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGATCATGGAAT 537
Query 743 TTTAGATTTGAAAGGAAA-CAAATCATACAGAACTA-CTTACATCAAACAAGGAT-GGAG 799
|||| | |||| | ||| | |||| || |||| | ||| | | | ||| | || |
Sbjct 538 TTTA-ACTTGAGACAAAAGC-CATCAAACGGAAC-AGTTTATGTTAGAGGAGGGTGGGTG 594
Query 800 AAGTTTCTGTCATGCCAATGGACTTAGAGCTGGAAG-TATCTTCACTTTTAAACTGATCC 858
||||| ||| |||||||||| |||| |||||| || || || |||||| |||||||| |
Sbjct 595 -AGTTTTTGTGATGCCAATGGGCTTAAAGCTGG-AGATAACTACACTTTCAAACTGAT-C 651
Query 859 AAAA-AGGAAAAACTCCGGTTCTACGTTTGTCCCCCAAAGAGCCAGAGGAACAAGCTAAT 917
|||| || | ||||| ||||||||||||| ||||| |||||| | || ||||||||
Sbjct 652 AAAAGAGCAGGAACTCTTGTTCTACGTTTGTTACCCAATGAGCCAAAAGAGGAAGCTAAT 711
Query 918 GAAGTGTCCCTTTCCC-CAGAACTGGAAAGCGATGAAGATAC-CAACCTTGGGAAGATTC 975
|||||||| | ||||| ||||| ||||||||||| ||| | |||||||| |||||||
Sbjct 712 GAAGTGTCTC-TTCCCGAAGAACCGGAAAGCGATGCAGA-GCGCAACCTTGAAAAGATTC 769
Query 976 AAAGG-AGGAAGAAAAG-GAAGAAGAATCCAAGTAGAGATATAGAGTCTTCTTCACTAGA 1033
||||| ||| || |||| |||||||||| || ||||| |||||||||||||| |||
Sbjct 770 AAAGGAAGG-AG-AAAGTGAAGAAGAATGTAACAAGAGAGGCAGAGTCTTCTTCACAAGA 827
Query 1034 TCCATCTTGTTTTGTGGCTCATAT-TACGCGTTCGAGTCTACGTTATGACATACTGTATC 1092
||| ||||||||||||||| || | | | | |||||||||||| ||||||| ||||||||
Sbjct 828 TCCCTCTTGTTTTGTGGCTAATGTCT-CCCCTTCGAGTCTACGCTATGACACACTGTATC 886
Query 1093 TTCCAAAGCGTTTTATGAGGGAAAATGGTCTAGATACAAGATGTGGAGAGATGATTTTGA 1152
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| |||
Sbjct 887 TTCCAAAGCGTTTTATGAGGGAAAATGGTGTAGACAAAAGATGTGGAGAGATGATTCTGA 946
Query 1153 TGAACGAAAAGGGCAGATCATGGGCTTTAGATTTGAAACG-AAAGAACTCATGCGGAACT 1211
| || |||||||| | ||||||| |||||||||||||| | |||||| |||| |||||||
Sbjct 947 TTAATGAAAAGGGAAAATCATGGACTTTAGATTTGAAA-GTAAAGAAATCATCCGGAACT 1005
Query 1212 ACT-TACATCAAACGAGGATGGAGAAGTTTCTGTCGTGCCAATGGACTTAGAGCTGGAAG 1270
|| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1006 TCTCT-CATCAAACGAGGATGGAGAAGTTTCTGTAGTGCCAATGGACTAAGAGCTGGAAG 1064
Query 1271 TTTCTATA-CTTTCAAACTGATCCA-AAATGAAAGAACTCTGGTTCTACGTTTGGTCCCC 1328
| || ||| || |||||||||| | ||| || |||||| |||||||||||| |||||
Sbjct 1065 TATC-ATAACTCTCAAACTGATAAAGAAAAGAGC-AACTCTTGTTCTACGTTTGATCCCC 1122
Query 1329 AAAGAGCCAGAAGAAG 1344
|| |||||||||||||
Sbjct 1123 AACGAGCCAGAAGAAG 1138
> AT2G24645.1 | Symbols: | Transcriptional factor B3 family protein
| chr2:10480532-10482795 REVERSE LENGTH=1814
Length=1814
Score = 682 bits (369), Expect = 0.0
Identities = 607/717 (85%), Gaps = 36/717 (5%)
Strand=Plus/Plus
Query 201 ATTTTGAGAATGGCAAAGCAACATTTCTTCAAGCCTCTTCTTCCCGGATTCCACAGTCAC 260
||||||| |||||| || |||||||||||||||||||||||||| || ||||||| |||
Sbjct 137 ATTTTGAAAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACACCCAC 196
Query 261 TTGACAATTCCTGTGGCTTTCTTCTTGAAGAATATAGAAGGAAGACATGAGCAGAAGACG 320
|||| ||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 197 TTGAGAATACCTGTAGCCTTCTTCTTGAAGAATATAGAAGGAAGATATGAGCAGAAGACG 256
Query 321 GCGGAGCTGAGATCAGACGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGA 380
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 257 GCGGAGCTGAGATCAGATGCGTCAAAGATAACTTGGGAAGTGAAGATAGATGGACAGAGA 316
Query 381 CTCACTGACGGTTGGAAAGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTG 440
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 317 CTCACTGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCGAATCGGTGACATTGTT 376
Query 441 GTGTTT-AGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTTGGGACCTAGTTGTTG 499
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 377 GT-TTTCAGACAAGAGAGAGATATGTCTTTCCACGTTACAATGTTGGGACCTAGTTGTTG 435
Query 500 TGAGATTCAATATGGTTCGTGTTTAGACAACAAGA-ACAACCTCGGGAAGATTCAAAGGA 558
|||||| |||||||||||||||| |||| | ||| | ||||||| | || | | |
Sbjct 436 TGAGATCCAATATGGTTCGTGTTCAGACGAGGAGAGA-AACCTCG--A-GA---A--G-A 485
Query 559 AGAAGAATCCAAGAAG-AGAAACAGAGTCTTCGTCACTAGATCCTTCTTGTTTTGT-GGC 616
|||||||||||| | | |||| || ||||||| ||||||||||||||||||||| | |||
Sbjct 486 AGAAGAATCCAA-ATGGAGAAGCAAAGTCTTCTTCACTAGATCCTTCTTGTTTT-TCGGC 543
Query 617 TAATGTCACGGTTTCGAGTCTACGCGATGACAGACTGAATCTTCCAA-GAAGTTTTGTGA 675
|||||| || |||||||||||| ||||| | || | |||||| | |||||||||
Sbjct 544 TAATGTGGCGCCTTCGAGTCTACGTTATGACTTAATGCTTTTTCCAATGG-GTTTTGTGA 602
Query 676 GGGAAAATGGTCTAGACACAAGATGTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGAA 735
||||||||||| ||| | ||| |||| |||||||||||||||||||||||||||||
Sbjct 603 GGGAAAATGGTGTAGTCG---GATCTGGAAAGATTGTTCTGATGAATGAAAAGGGCAGAT 659
Query 736 CATGGACTTT-AGATTTGAAAGGAAA-CAAATCATACAGAACTACTT-ACATCAAACAAG 792
|||||| ||| | | |||| | ||| | | |||| | |||| | || | | | | ||
Sbjct 660 CATGGAATTTTA-ACTTGAGACAAAAGCCA-TCATGCGGAAC-AGTTTATGTTAGAGGAG 716
Query 793 GATGGA-GAAGTTTCTGTCATGCCAATGGACTT-AGAGCTGGA-AGTATCTTCACTTTTA 849
| ||| || |||| ||| |||||||||||||| | ||||||| | ||||| |||||| |
Sbjct 717 GGTGGGTGA-GTTTTTGTGATGCCAATGGACTTCA-AGCTGGAGA-TATCTACACTTTCA 773
Query 850 AACTGATCCAAAA-AGGAAAAACTCCGGTTCTACGTTTGTCCCCCAAAGAGCCAGAG 905
|||||||| |||| |||| ||||| ||||||||||||| ||||||| | |||||
Sbjct 774 AACTGATC-AAAAGAGGAGGAACTCTTGTTCTACGTTTGTTACCCAAAGGGGCAGAG 829
Score = 516 bits (279), Expect = 3e-145
Identities = 656/828 (79%), Gaps = 66/828 (8%)
Strand=Plus/Plus
Query 1016 AGAGTCTTCTTCACTAGATCCATCTTGTTTTGTGGCTCATATTACGCGTTCGAGTCTACG 1075
|||||||| |||||||||||| ||||||||||||||| || || ||| ||||| ||||||
Sbjct 826 AGAGTCTTGTTCACTAGATCCCTCTTGTTTTGTGGCTAATGTTGCGCCTTCGACTCTACG 885
Query 1076 TTATGACATACTGTATCTTCCAAAGCGTTTTATGAGGGAAAATGGTCTAGATACAAGATG 1135
||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||| |
Sbjct 886 CTATGACACACTGTATCTTCCAAAGCGTTTTATGAGGGAAAATGGTGTAGACAAAAGACG 945
Query 1136 TGGAGAGATGATTTTGATGAACGAAAAGGGCAGATCATGGGCTTTAGATTTGAAACGAAA 1195
||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||| |||
Sbjct 946 TGGAGAGATGATTCTGATGAATGAAAAGGGCAAATCATGGACTTTAGATTTGAAACTAAA 1005
Query 1196 GAACTCATGCGGAACTACT-TACATCAAACGAGGATGGAGAAGTTTCTGTCGTGCCAATG 1254
||| |||||||||||| | | ||||| |||||||||||||||||||||| |||||||||
Sbjct 1006 GAAATCATGCGGAACTTCCCT-CATCAGACGAGGATGGAGAAGTTTCTGTAGTGCCAATG 1064
Query 1255 GACTTAGAGCTGGAAGTTTCTAT-ACTTTCAAACTGATCCA-AAATGAAAGAACTCTGGT 1312
|||| |||||||||||| || || |||||||||||||| | ||| | ||||||| ||
Sbjct 1065 GACTAAGAGCTGGAAGTATC-ATTACTTTCAAACTGATTAAGAAAAGTG-GAACTCTTGT 1122
Query 1313 TCTACGTTTGGTCCCCAAAGAGCCAGAAGAAGAAGAA-GAA-A-AAGCCAATG---TAGA 1366
|||| ||||| || |||| |||||||||||||||| | | |||| |||| ||||
Sbjct 1123 TCTATGTTTGCTCTCCAACGAGCCAGAAGAAGAAGTGTGCTCAGAAGCTAATGAAGTAGA 1182
Query 1367 GTCTCTTTCCACAGAACC-GAGTG--ATGAAGAGAGCAGCCA-AGATGAGAAGAGCTCAC 1422
||||||||| ||||| | || | |||||||||| ||||| | | ||||| | ||||
Sbjct 1183 GTCTCTTTCGACAGATCAAGAAAGCCATGAAGAGAGTAGCCACA-ACGAGAAAATCTCA- 1240
Query 1423 AAGAATGTTCAAAAACAATGGAAAAGAAGAGTATATTGATACAGAAAGCTTCATCTTCAG 1482
| ||| | ||| |||||||||| ||| | ||||| ||||||||| ||||||
Sbjct 1241 A-GAA-G---AAA------GGAAAAGAAGGGTAGAATGATATGGAAAGCTTCGTCTTCAC 1289
Query 1483 CATCCCAAAGCCGATTCGTGACCGTAACTCTTACACTTTACAACGTC--AGCTTATCTAG 1540
||||| ||| |||||| ||||| ||| |||||||| ||| ||| || | | | ||| |
Sbjct 1290 CATCCGAAAACCGATTTGTGACATTAAATCTTACACCTTATAACATCCTA-CGT-TCT-G 1346
Query 1541 -ACTGAC-TCTTCCCATACCTTTCACAAAGG-TGAATGGCATACAA--AATGCAAAG-AA 1594
|||| | |||||| ||||| ||||| | || ||||||| || ||| || | ||| ||
Sbjct 1347 CACTG-CGTCTTCCGATACCCTTCACGA-GGATGAATGGTAT-CAATGAA-G-AAACTAA 1401
Query 1595 GATGAGTTTCTTGGATAAACATGGCGTGAAATGGTCTA-CGAGTCTGAGGTT--TGAAC- 1650
|||| | | |||||||||||||| |||| |||| || ||| |||| |||| || ||
Sbjct 1402 AATGACTCTGTTGGATAAACATGGTATGAAGTGGT-TAACGACTCTGCGGTTGGTGGACT 1460
Query 1651 AGGACCGTCAGAGAATGAGATTGGTAGGAGGCTGGAAAGAGTTT--TGCGATGCGAACGG 1708
| | | | ||| || || |||||||||||||||||| | || | | | || |||||
Sbjct 1461 ACAAAAGAAAAAGACTGGGAATGGTAGGAGGCTGGAAAG-GATTCATCCAA-GCTAACGG 1518
Query 1709 TGTGAAGATTGGA-GAATCGATCATGTTGGAGCTAGTTTTGG-AAGCAGACAA-AAGCTT 1765
||||||| | ||||| ||||||||||| || | ||||| ||| ||| || ||| ||
Sbjct 1519 TGTGAAGGCAA-ACGAATCCATCATGTTGGAACT-GATTTGGGAAGAAGA-AACAAG-TT 1574
Query 1766 T-GTTCTTAAGTTCTGCTCCAAGGT-AATGCAAG-AGATCAAATGAAA 1810
|| |||||||||||||||||||| || || || | |||||||||||
Sbjct 1575 GCGTCCTTAAGTTCTGCTCCAAGGTGAA-GCTAGCA-ATCAAATGAAA 1620
> AT2G24748.1 | Symbols: | pseudogene of transcriptional factor
B3 family protein | chr2:10536845-10537829 FORWARD LENGTH=772
Length=772
Score = 496 bits (268), Expect = 4e-139
Identities = 537/660 (81%), Gaps = 45/660 (7%)
Strand=Plus/Plus
Query 264 ACAATTCCTGTGGCTTTCTTC-TTGAAGAATATAGAAGGAAGACATGAGCAGAAGACGGC 322
||||||||| | || |||||| ||| |||||||| |||||||| ||||||||||||||||
Sbjct 1 ACAATTCCTTTAGCCTTCTTCTTTG-AGAATATATAAGGAAGAAATGAGCAGAAGACGGC 59
Query 323 GGAGCTGAGATCAGACGCGTCAAAGATAACTTGGGAAGTGAAGATTGATGGACAGAGACT 382
||| | || ||||| || || |||| ||| ||| ||||||| || ||||| ||||||||
Sbjct 60 AGAGTTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACT 119
Query 383 CACTGACGGTTGGAAAGAGTTTGCTCTCTCGCATGATCTTCGAATCGGTGACATTGTGGT 442
|| ||||||||||||||||||||||| | |||||| ||||| | || ||||| | ||
Sbjct 120 TACCAACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACATCATTGT 179
Query 443 GTTT-AGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTG 501
||| ||||||||||| | ||| |||||||||||||||||| |||||||||||||||
Sbjct 180 -TTTCAGACAAGAGAGTGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTTGTTGT- 237
Query 502 AGATTCAATATGGT-TCGTGTTTAGACAACAAGAACAACCTCGGGAAGATTCAAAGGAAG 560
|||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 238 -GATTCAATAT-GTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAAGGAAA 295
Query 561 AAGAATCCAAGAAGAGAAACAGAGTCTTCGTCACTAGATC-CTTCTTGTTTTGTGGCTAA 619
||||| | |||| |||||||||| |||||||| || ||||||||||||||||
Sbjct 296 AAGAA---A-GAAG-----CAGAGTCTTC---ACTAGATCTCT-CTTGTTTTGTGGCTAA 342
Query 620 TGTCACGGTTTCGAGTCTACGCGATGACAGACTGAATCTTCCAA-GAAGTTTTGTGAGGG 678
||||||| ||||| ||||| | | | |||||| || |||||||||||
Sbjct 343 TGTCACGCCTTCGAATCTAC---A--A-----T----CTTCCATTGA-GTTTTGTGAGGC 387
Query 679 AAAATGGTCTAGACACAAGATGTGGAGAGATTG-TTCTGATGAATGAAAAGGGCAGAACA 737
||| ||||||||||| ||| ||||||||||| | ||||||| || ||||| |||||| ||
Sbjct 388 AAA-TGGTCTAGACAAAAGGTGTGGAGAGAT-GATTCTGATCAACGAAAAAGGCAGATCA 445
Query 738 TGGACTTTAGATTTGAAAGGAAACAAATCATA-CAGAACTACTTACATCAAACAAGGATG 796
|||||| |||| |||||| |||| || |||| | ||||||||||||||||| ||||||
Sbjct 446 TGGACTGTAGACTTGAAACGAAAGAACTCATGTCC-AACTACTTACATCAAACGAGGATG 504
Query 797 GAGAAGTTTCTGTCATGCCAATGGACTTAGAGCTGGAAGTATCTTCACTTTTAAACTGAT 856
| ||||||||||| ||||||||||| |||||||||||||| |||| | ||| |||||| |
Sbjct 505 GGGAAGTTTCTGTAATGCCAATGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTT 564
Query 857 CCAAAAAGGAAAAACTCC-GGTTCTACGTTTGTCCCCCAAAGAGCCAGAGGAACAAGCTA 915
||||| ||| |||||| |||| |||||| |||| || |||| ||| ||| ||||||
Sbjct 565 CCAAAGAGGTGGAACTCCAGGTT-TACGTTCATCCCACAGAGAGGTAGAAGAAGAAGCTA 623
> AT2G12170.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1);
Has 18 Blast hits to 18 proteins in 1 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:4890080-4891424
REVERSE LENGTH=707
Length=707
Score = 322 bits (174), Expect = 8e-87
Identities = 216/236 (92%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 186 CTGAAAGATTTA-GGCATTTTGAGAATGGCAAAGCAACATTTCTTCAAGCCTCTTCTTCC 244
|||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 393 CTGAAAGATTTATGG-ATTTTGATAATGGCGAAGCAACATTTCTTCAAGCCTCTTCTTCC 451
Query 245 CGGATTCCACAGTCACTTGACAATTCCTGTGGCTTTCTTCTTGAAGAATATAGAAGGAAG 304
|||||||||| |||| |||||||||| || || ||||||||||||||||||||||||||
Sbjct 452 CGGATTCCACTGTCATTTGACAATTCATGCAGCCTTCTTCTTGAAGAATATAGAAGGAAG 511
Query 305 ACATGAGCAGAAGACGGCGGAGCTGAGATCAG-ACGCGTCAAAGATAACTTGGGAAGTGA 363
| | ||| ||||||||||||||||||||| || ||| ||| |||||||||||||||||||
Sbjct 512 AGACGAGTAGAAGACGGCGGAGCTGAGAT-AGGACGTGTCGAAGATAACTTGGGAAGTGA 570
Query 364 AGATTGATGGACAGAGACTCACTGACGGTTGGAAAGAGTTTGCTCTCTCGCATGAT 419
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 571 AGATAGATGGACAGAGACTCACTGACGGTTGTAAAGAGTTTGCTCTCTCACATGAT 626
> AT2G12160.1 | Symbols: | pseudogene, hypothetical protein |
chr2:4888068-4888932 REVERSE LENGTH=865
Length=865
Score = 274 bits (148), Expect = 2e-72
Identities = 218/250 (87%), Gaps = 12/250 (5%)
Strand=Plus/Plus
Query 1567 AGGTGAATGGCATACAAAATGCAAAGAAGATGAGTTTCTTGGATAAACATGGCGTGAAAT 1626
|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 617 AGGTGAATGGCATAAAAAATGCAAAGAAGATGAGTTTCTTGGATAAAGATGATGTGAAAT 676
Query 1627 GGTCTACGAGTCTGAGGTTTGAACAGGACCGTCAGAGAATGAGATTGGTAGGAGGCTGGA 1686
||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||| ||||
Sbjct 677 GGTCTACGAATCTGAGGTTTGAAAAGGACCGTAAGAGAATGAGATTAGTAGGAGGTTGGA 736
Query 1687 AAGA-GTTTTGCGATGCGAACGGTGTGAAGATTGGAGAATCGATCA-TGTTGGAGCTAGT 1744
|| | ||||||| |||| ||| ||||||||| ||||||||||| | ||||||| || |
Sbjct 737 AA-ACGTTTTGCAATGCTAACTGTGTGAAGAGAGGAGAATCGAT-AGTGTTGGAACT-GA 793
Query 1745 TT-TGGAAGCAGACAAAAGCTTTGTTCTTAAGTTCTGCTCCAAGGTAAT---GCAAGAGA 1800
|| |||||||||| || |||||||||||||||||| ||| || ||||| ||||||||
Sbjct 794 TTGTGGAAGCAGA-AA--GCTTTGTTCTTAAGTTCTACTCTAATGTAATAATGCAAGAGA 850
Query 1801 TCAAATGAAA 1810
|||||| |||
Sbjct 851 TCAAATAAAA 860
Score = 158 bits (85), Expect = 2e-37
Identities = 93/97 (96%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 543 GGGAAGATTCAAAGGAAGAAGAATCCAAGAAGAGAAACAGAGTCTTCGTCACTAGATCCT 602
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GGGAAGATTCAATGGAAGAAGAATCCAAGAAGAGAAACAGAGTCTTCGTCACTAGATCCT 313
Query 603 TCTTGTTTTGTGGCTAATGTCACGGTTTCGAGTCTAC 639
||||||| |||||||||||||| || |||||||||||
Sbjct 314 TCTTGTTGTGTGGCTAATGTCATGGCTTCGAGTCTAC 350
Score = 67.6 bits (36), Expect = 4e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 965 TGGGAAGATTCAAAGGAGGAAGAAAAGGAAGAAGAATCC 1003
||||| |||||||||||||||||||||||||||||||||
Sbjct 523 TGGGATGATTCAAAGGAGGAAGAAAAGGAAGAAGAATCC 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90461382090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5