BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932561
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 252 5e-66
AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 152 5e-36
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 252 bits (136), Expect = 5e-66
Identities = 177/197 (90%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 635 TGATGTAATAGATTTTAGCCGGTTCACATGTATAGTGAGTAGGATAGATGAGGAGGGTGG 694
||||||| | ||||| || |||||| |||||| |||||||||| |||||||||||| |||
Sbjct 1039 TGATGTATTGGATTTGAGTCGGTTCGCATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGG 1098
Query 695 TAAATGGGTTGAGGTCACCGACTTGGGAAACCGTGTCTTCTTTATTGGACACTTTGGAAA 754
| ||||||||||||| | ||| |||||| ||||||| || ||||||||||||||||||||
Sbjct 1099 TCAATGGGTTGAGGTGATCGATTTGGGAGACCGTGTGTTGTTTATTGGACACTTTGGAAA 1158
Query 755 TGTCT-CTTGCTCGGCTAAGGAACTTCCTGATGGTTGTGGTCTGAGTGGGAACTCAATTT 813
||||| | ||||| |||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1159 TGTCTGC-TGCTCAGCTAAGGAGCTTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTT 1217
Query 814 TGTTCACCAATGAGCCA 830
|||||||||||||||||
Sbjct 1218 TGTTCACCAATGAGCCA 1234
> AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174);
BEST Arabidopsis thaliana protein match is: Protein of
unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast
hits to 121 proteins in 7 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353
REVERSE LENGTH=1511
Length=1511
Score = 152 bits (82), Expect = 5e-36
Identities = 134/157 (85%), Gaps = 11/157 (7%)
Strand=Plus/Plus
Query 85 ACTGTTTCGATGTTGTTCATGCTCGCTCTGTTTGCAA-TTCGTGGCGATCTACGTTTCCC 143
|||||||||||||||||||||||||||||||||||| || ||||||||| || |||||
Sbjct 274 ACTGTTTCGATGTTGTTCATGCTCGCTCTGTTTGCAGCTT-GTGGCGATCCACATTTCC- 331
Query 144 TTTCCTTCTTGCCTA-TTACGCCCAAGTTACTCTCTTCC-TACTTTCGACGAGTTCACTC 201
||| | || ||| ||||||||||||||||||||||| | | ||| |||| ||| ||
Sbjct 332 TTTG-T-CTC-CCTTGTTACGCCCAAGTTACTCTCTTCCCT-CGTTCAACGAATTCCCT- 386
Query 202 TC-GAAAGCAAAGACTTGTGCACCCTCGAGAAGGTCC 237
|| ||||||||| || |||||||||||||||||||||
Sbjct 387 TCAGAAAGCAAAAACATGTGCACCCTCGAGAAGGTCC 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5