BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932562
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 311 7e-84
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 311 bits (168), Expect = 7e-84
Identities = 365/457 (80%), Gaps = 25/457 (5%)
Strand=Plus/Plus
Query 1 TGGTGTTAACAAGTGCGGAAATGAAGTGGAAG-CGG-CTTGAGAACGTCCCATATGCTAT 58
||||||| | |||| | ||||||| ||||| | || | || ||| | |||| |||| |
Sbjct 786 TGGTGTTGAGAAGTTCTGAAATGAGGTGGATGAAGGTCAAGAAAACCT-CCAT-TGCT-T 842
Query 59 -ATGTTCGGATTTAGTCACTTTTAGAGGAAGATTTTACGCATCCTTTCTTAGCAGAAATA 117
||| || |||||||| ||||||||| |||||||| | | | ||||||| | | | |
Sbjct 843 CATGCAAGGGTTTAGTCAGTTTTAGAGGTAGATTTTATGTAACTTTTCTTAACGGGGACA 902
Query 118 CTTT-CCTTATCGATCCTTATTCACTGGAGGTGACTCTCCTGATGCCCTC--A-CCTCAG 173
||| | || ||||||||||||| |||| |||||||||||||||||| | |||| |
Sbjct 903 -TTTACGTTTTCGATCCTTATTCGTTGGAACAGACTCTCCTGATGCCCTCAGAGCCTCTG 961
Query 174 AAGCCACTA--AACTATCGGGTTGCATTTGGCAATGATGAACTTTTCCTTGTTGAG--G- 228
| | | | || |||| | || || ||||| |||||| |||||||| |||||| |
Sbjct 962 -CG-CTCGAGCAAGTATCTGATTCCAAATGGCAGTGATGAGCTTTTCCTGGTTGAGAAGT 1019
Query 229 T-AA-CCA--TCCCAAATTTTGATGTAATAGATTTTAGCCGGTTCACATGTATAGTGAGT 284
| || ||| ||| || ||||||| | ||||| || |||||| |||||| |||||||
Sbjct 1020 TCAACCCATTTCCTGAA-GCTGATGTATTGGATTTGAGTCGGTTCGCATGTAGAGTGAGT 1078
Query 285 AGGCTAGATGAGGAGGGTGGTAAATGGGTTGAGGTCACCGATTTGGGAAACCATGTCTTC 344
|||||||||||||||| |||| ||||||||||||| | |||||||||| ||| ||| ||
Sbjct 1079 AGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGGTGATCGATTTGGGAGACCGTGTGTTG 1138
Query 345 TTTATTGGACACTTTGGAAATGTCT-CTTGCTCGGCTAAGGAACTTCCTGATGGTTGTGG 403
||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||||
Sbjct 1139 TTTATTGGACACTTTGGAAATGTCTGC-TGCTCAGCTAAGGAGCTTCCTGATGGTTGTGG 1197
Query 404 TCTGAGTGGGAACTCAATTTTGTTCACCAATGAGCCA 440
| |||||||||||||||||||||||||||||||||||
Sbjct 1198 TGTGAGTGGGAACTCAATTTTGTTCACCAATGAGCCA 1234
Score = 178 bits (96), Expect = 7e-44
Identities = 137/156 (88%), Gaps = 6/156 (4%)
Strand=Plus/Plus
Query 525 CTACATGAGGAGGGTGGGAAATGGGCTGAGG-CCTCCGATTTGGGTA-ACCATGTCTTCT 582
||| ||||||||| ||| |||||| ||||| | ||||||||| | ||| ||| || |
Sbjct 1082 CTAGATGAGGAGGCTGGTCAATGGGTTGAGGTGAT-CGATTTGGG-AGACCGTGTGTTGT 1139
Query 583 TTATTGGACACTTTGGAAATGTCT-CTTGCTCGGCTAAGGAACTTCCTGATGGTTGTGGT 641
|||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||
Sbjct 1140 TTATTGGACACTTTGGAAATGTCTGC-TGCTCAGCTAAGGAGCTTCCTGATGGTTGTGGT 1198
Query 642 CTGAGTGGGAACTCAATTTTGTTCACCAATGAGCCA 677
|||||||||||||||||||||||||||||||||||
Sbjct 1199 GTGAGTGGGAACTCAATTTTGTTCACCAATGAGCCA 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5