BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932563
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 339 2e-92
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 322 2e-87
> AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174);
BEST Arabidopsis thaliana protein match is: Protein of
unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast
hits to 121 proteins in 7 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353
REVERSE LENGTH=1511
Length=1511
Score = 339 bits (183), Expect = 2e-92
Identities = 361/442 (82%), Gaps = 31/442 (7%)
Strand=Plus/Plus
Query 24 TGGTGTTAACAAGTGCGGAAATGAAGTGGAAGCGGCTTGAGAACGTCCCATATGCTATAT 83
|||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 636 TGGTGTTAACAAGTGCTGAAATGAGGTGGAAGCAGCTTGAGAACGTCCCATATACTATAT 695
Query 84 GC-TCGGATTTAGTCACTTTTAGAGGAAGATTTTACGCATC-CTTTC-TT-AGCAGAAAT 139
|| | ||| |||||||||||||||| |||||||| ||| | |||| || || | ||||
Sbjct 696 GCGT-TGATATAGTCACTTTTAGAGGCAGATTTTATGCA-CTTTTTCTTTCAGGACAAAT 753
Query 140 ACTTTCCTTATCGATCCTTATTCGCTGGAGGTGACTCTCCT-TATGCCCTCACCTCAGAA 198
| || ||||||||||||||||||||||||||||||| || | || ||||||||||| |
Sbjct 754 -C-GTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTTCTGT-TGTCCTCACCTCAGGA 810
Query 199 GCCACTA-AACTA---TCT--GGTTGCATTTGGCAATGATGAACTTTTCCTTGTTGAGGT 252
|| | | || || ||| |||| ||| |||||| |||||||||||||| ||||||||
Sbjct 811 CCCGCGAGAATTACGGTCTCTGGTTCCATATGGCAAAGATGAACTTTTCCTGGTTGAGGT 870
Query 253 AACCATCCCAAATTTTGATGTAATAGATTTTAGCCGGTTCA-CAT-GTATAGTGAGTAGG 310
|| |||||||||| || ||||||||| ||||| ||||| | | | ||| |||||| |||
Sbjct 871 AATCATCCCAAATGATGTTGTAATAGACTTTAGTCGGTT-AGC-TCGTAGAGTGAGGAGG 928
Query 311 CTAGATGAGGAGGGTGGTAAATGGGTTGAGGTCACCGATTTGGGAAACCGTGTCTTCTTT 370
|||||||| ||| ||||||||||||||||||| ||||||||| || |||| || ||
Sbjct 929 GTAGATGAGAAGGCTGGTAAATGGGTTGAGGTCGGTGATTTGGGAGACTGTGTATTGTT- 987
Query 371 ATTGGACACTTTGGAAATGTCTCTTGCTCGGCTAAGGAATTTCCT-GATGGTTGTGGTCT 429
| | || |||||| |||||||||||||||||||||||||| | |||| |||| |
Sbjct 988 A-----C--TT-GGAAATCTCTCTTGCTCGGCTAAGGAATTTCCTCGG-GGTTTTGGTTT 1038
Query 430 GAGTGGGAACTCAATTTTGTTC 451
|| || |||| || ||||||||
Sbjct 1039 GACTGAGAACGCAGTTTTGTTC 1060
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 322 bits (174), Expect = 2e-87
Identities = 367/457 (80%), Gaps = 25/457 (5%)
Strand=Plus/Plus
Query 24 TGGTGTTAACAAGTGCGGAAATGAAGTGGAAG-CGG-CTTGAGAACGTCCCATATGCTAT 81
||||||| | |||| | ||||||| ||||| | || | || ||| | |||| |||| |
Sbjct 786 TGGTGTTGAGAAGTTCTGAAATGAGGTGGATGAAGGTCAAGAAAACCT-CCAT-TGCT-T 842
Query 82 -ATGCTCGGATTTAGTCACTTTTAGAGGAAGATTTTACGCATCCTTTCTTAGCAGAAATA 140
|||| || |||||||| ||||||||| |||||||| | | | ||||||| | | | |
Sbjct 843 CATGCAAGGGTTTAGTCAGTTTTAGAGGTAGATTTTATGTAACTTTTCTTAACGGGGACA 902
Query 141 CTTT-CCTTATCGATCCTTATTCGCTGGAGGTGACTCTCCTTATGCCCTC--A-CCTCAG 196
||| | || |||||||||||||| |||| ||||||||| |||||||| | |||| |
Sbjct 903 -TTTACGTTTTCGATCCTTATTCGTTGGAACAGACTCTCCTGATGCCCTCAGAGCCTCTG 961
Query 197 AAGCCACTA--AACTATCTGGTTGCATTTGGCAATGATGAACTTTTCCTTGTTGAG--G- 251
| | | | || |||||| || || ||||| |||||| |||||||| |||||| |
Sbjct 962 -CG-CTCGAGCAAGTATCTGATTCCAAATGGCAGTGATGAGCTTTTCCTGGTTGAGAAGT 1019
Query 252 T-AA-CCA--TCCCAAATTTTGATGTAATAGATTTTAGCCGGTTCACATGTATAGTGAGT 307
| || ||| ||| || ||||||| | ||||| || |||||| |||||| |||||||
Sbjct 1020 TCAACCCATTTCCTGAA-GCTGATGTATTGGATTTGAGTCGGTTCGCATGTAGAGTGAGT 1078
Query 308 AGGCTAGATGAGGAGGGTGGTAAATGGGTTGAGGTCACCGATTTGGGAAACCGTGTCTTC 367
|||||||||||||||| |||| ||||||||||||| | |||||||||| ||||||| ||
Sbjct 1079 AGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGGTGATCGATTTGGGAGACCGTGTGTTG 1138
Query 368 TTTATTGGACACTTTGGAAATGTCT-CTTGCTCGGCTAAGGAATTTCCTGATGGTTGTGG 426
||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||
Sbjct 1139 TTTATTGGACACTTTGGAAATGTCTGC-TGCTCAGCTAAGGAGCTTCCTGATGGTTGTGG 1197
Query 427 TCTGAGTGGGAACTCAATTTTGTTCACCAATGAGCCA 463
| |||||||||||||||||||||||||||||||||||
Sbjct 1198 TGTGAGTGGGAACTCAATTTTGTTCACCAATGAGCCA 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5