BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932564

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G06090.1 | Symbols:  | Plant self-incompatibility protein S1...   429    1e-119


> AT2G06090.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr2:2371607-2372014 REVERSE LENGTH=408
Length=408

 Score =  429 bits (232),  Expect = 1e-119
 Identities = 351/408 (86%), Gaps = 9/408 (2%)
 Strand=Plus/Plus

Query  22   ATGAATAATCTTTTCGTTTTGGTCGTTGTAATTGCTTTGAGTATAGGATTGAACAACGGT  81
            |||||||||||||| |||||| || || | |||||||||||| | |||| |||||| |||
Sbjct  1    ATGAATAATCTTTTTGTTTTGCTCATTATTATTGCTTTGAGTGTGGGATCGAACAATGGT  60

Query  82   AGC-AGACTCTTTCCAAAAAACCAATTATATTTTAGAAACTCTTTAAGCAGGAATGATGA  140
            ||| || ||||  ||||||||||||||| | |||||||||||||| ||||||||| ||||
Sbjct  61   AGCAAG-CTCTGGCCAAAAAACCAATTACACTTTAGAAACTCTTTTAGCAGGAATTATGA  119

Query  141  TGTTCTTACGGTTCATTGCAAATCTGATGACGACGATCTCGGTATTCACTCAGTG-CAAC  199
            ||||||||||||||||||||||||| | || || ||||||||||||||| ||||| |  |
Sbjct  120  TGTTCTTACGGTTCATTGCAAATCTAAAGATGATGATCTCGGTATTCACACAGTGGCT-C  178

Query  200  GTTCATACGAATATGGTTTTAAGTTTGGGGATAGCCTTCTCCATTTGACTGCGTTTGTCT  259
            ||||||||||||||  ||||||||||| ||||||| || ||  |  ||||| |||| |||
Sbjct  179  GTTCATACGAATATAATTTTAAGTTTGAGGATAGCGTTTTCGGTAGGACTGAGTTTTTCT  238

Query  260  GTACACTAGA-GCATGGGGTCAGTTCTAAATATTCTGTAACGTTTACTGCATATATAGCG  318
            |||||||| | |||||||||  ||||||||||||||||||| ||||||||||||| ||||
Sbjct  239  GTACACTA-ATGCATGGGGTTGGTTCTAAATATTCTGTAACATTTACTGCATATAAAGCG  297

Query  319  AATCCt--tttt-ttATAAGTACCGGTGTCATTAAACTTTGGGTTGCTTTTGATGATGGG  375
            || |||  |||| ||  ||||||||||||||| ||| |||||| |||||| |||||||| 
Sbjct  298  AAACCTGCTTTTGTTGCAAGTACCGGTGTCATAAAAATTTGGGATGCTTTAGATGATGGA  357

Query  376  ATCTACCTCACAGATGAAGATCATGATTTAGTGAAAATTTATAGTTGG  423
            ||||||||||||||||||||||| ||||| |||||||| ||| |||||
Sbjct  358  ATCTACCTCACAGATGAAGATCACGATTTCGTGAAAATATATGGTTGG  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5