BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932567
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40150.1 | Symbols: | Peroxidase superfamily protein | chr5... 372 3e-102
AT3G28200.1 | Symbols: | Peroxidase superfamily protein | chr3... 252 3e-66
> AT5G40150.1 | Symbols: | Peroxidase superfamily protein | chr5:16059509-16061043
REVERSE LENGTH=1535
Length=1535
Score = 372 bits (201), Expect = 3e-102
Identities = 229/243 (94%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 239 CCGCCGCAGCTCTCCGCCTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGATGCCTCCG 298
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 495 CCGCCGCAGCTCTCCGCCTCTTCTTCCACGACTGTTTCCCCAACGGCTGCGACGCCTCCG 554
Query 299 TCCTCGTTTCCTCAACCACTTTCAACACCGCCGAACGCGATTCATCAATCAACCTCTTTC 358
|||||||||| || ||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct 555 TCCTCGTTTCTTCCACCGCTTTCAACACCGCCGAACGCGATTCATCAATCAATCTCTCTC 614
Query 359 TCCCCGGCGACGGATTCGACGTCGTGATCCGCGCTAAAACAGCTCTAGAACTCGCTTGTC 418
||||||| |||||||||||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 615 TCCCCGGAGACGGATTCGACGTAGTAATCCGAGCTAAAACAGCTCTCGAACTCGCTTGTC 674
Query 419 CCAACACAGTCTCTTGCTCTGATATCATCGCCGTCGCGGTACGTGATCTCCTCGTCACCG 478
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 675 CCAACACAGTCTCTTGCTCCGATATCATCGCCGTCGCGGTACGTGATCTCCTCGTAACCG 734
Query 479 TCG 481
|||
Sbjct 735 TCG 737
Score = 309 bits (167), Expect = 2e-83
Identities = 194/207 (94%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 10 TCT-CCTTCAACAATGGCGGACCAATCTCAACTCAATAATCTCACCATCAACATCATCAT 68
||| ||||||||||||||||| |||||||||||||| ||||||||||||| | || || |
Sbjct 295 TCTCCCTTCAACAATGGCGGAACAATCTCAACTCAAGAATCTCACCATCATCCTCCTCCT 354
Query 69 CCTCTGCTTCTCCTTCCAATCACTATCCTCCGCCGCCGAATCTCACCTCACCGTCGATTT 128
||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 355 CCTCTGCTTATCCTTCCAATCACTATCCTTCGCCGCCGAATCTCACCTAACCGTCGATTT 414
Query 129 CTACTCCAAATCTTGCCTTAAATTCCTCGACATTATCCGCGAAACCATCACCAACAAACA 188
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CTACTCCAAATCATGCCCTAAATTCCTCGACATTATCCGCGAAACCATCACCAACAAACA 474
Query 189 GATCTCAACTCCAACGACCGCCGCCGC 215
||||||||||||||| |||||||||||
Sbjct 475 GATCTCAACTCCAACAACCGCCGCCGC 501
Score = 169 bits (91), Expect = 4e-41
Identities = 101/106 (95%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 479 TCGCGGTAGCTTTAAAGAAAGCTTGTTCGAATTACAAAAATGACCCTACGATCTCTGTCT 538
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 984 TCGCGGTAGCTTTAAAGAAAGCTTGTTCGAATTCCAAAAATGACCCTACGATATCTGTCT 1043
Query 539 TTAACGACGTTATGACTCCAAACAAATTCGATAATATGTATCTCCA 584
| ||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1044 TCAACGACGTTATGACTCCGAACAAATTCGATAATATGTATTTCCA 1089
> AT3G28200.1 | Symbols: | Peroxidase superfamily protein | chr3:10518070-10519166
FORWARD LENGTH=1097
Length=1097
Score = 252 bits (136), Expect = 3e-66
Identities = 207/242 (86%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 241 GCCGCAGCTCTCCGCCTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGATGCCTCCGTC 300
||||| | | |||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 169 GCCGCCGTTATCCGTCTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGACGCCTCCGTC 228
Query 301 CTCGTTTCCTCAACCACTTTCAACACCGCCGAACGCGATTCATCAATCAACCTCTTTCTC 360
||| | ||||| ||| | ||||||||||| ||||| || || || |||||||||| |||
Sbjct 229 CTCATCTCCTCCACCGCCTTCAACACCGCAGAACGTGACTCTTCCATCAACCTCTCACTC 288
Query 361 CCCGGCGACGGATTCGACGTCGT-GATCCGCGCTAAAACAGCTCTAGAACTCGCTTGTCC 419
||||| ||||| ||||||||| | | |||| || ||||||||||| ||||||||||||||
Sbjct 289 CCCGGAGACGGTTTCGACGTCATTG-TCCGAGCCAAAACAGCTCTCGAACTCGCTTGTCC 347
Query 420 CAACACAGTCTCTTGCTCTGATATCATCGCCGTCGCGGTACGTGATCTCCTCGTCACCGT 479
||||||||| |||||||| || |||||| ||||||| ||||||||| || |||||||
Sbjct 348 CAACACAGTTTCTTGCTCAGACATCATCTCCGTCGCAACACGTGATCTTCTAATCACCGT 407
Query 480 CG 481
||
Sbjct 408 CG 409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5