BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932568

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64840.1 | Symbols:  | Protein of unknown function (DUF295) ...   501    3e-141


> AT1G64840.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637

 Score =  501 bits (271),  Expect = 3e-141
 Identities = 421/491 (86%), Gaps = 19/491 (4%)
 Strand=Plus/Plus

Query  178   AGACTC-CCATGATGCCCTCTGAGCCTCTGCGATCAAGCAATTATCTGATTGCATCTGGC  236
             |||||| || |||||||||| ||||||||||| || ||||| ||||||||| ||  ||||
Sbjct  933   AGACTCTCC-TGATGCCCTCAGAGCCTCTGCGCTCGAGCAAGTATCTGATTCCAAATGGC  991

Query  237   AATGATGAGCTTTTCCTGGTTGAGAAATTCAACCCATTTCCTGAATG-TGGTCG-AATAA  294
             | |||||||||||||||||||||||| |||||||||||||||||| | || | | | |  
Sbjct  992   AGTGATGAGCTTTTCCTGGTTGAGAAGTTCAACCCATTTCCTGAA-GCTGAT-GTATTGG  1049

Query  295   ATTTTAAG-CGGTTTATATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTAAATGGGTT  353
             | ||| || |||||   |||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1050  A-TTTGAGTCGGTTCGCATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTCAATGGGTT  1108

Query  354   GAGGTCAACAATCTGGGAGACCGTGTGTTGTTTATTGGACACTTTGGAAATGTTTGCTGC  413
             ||||| | | || |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1109  GAGGTGATCGATTTGGGAGACCGTGTGTTGTTTATTGGACACTTTGGAAATGTCTGCTGC  1168

Query  414   TCGGCTAAGGAGCTTCCTGTTGATTGTGGTGTGAGTGTGAACTCAATTTTGTTCACCAAT  473
             || |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct  1169  TCAGCTAAGGAGCTTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGTTCACCAAT  1228

Query  474   GAGCCAGGC-AGTGTAAC-TTACTCCT-TCAAATATGGAATACAGACAGGAAGGGTTGAA  530
             ||||||||| | |||||| ||   ||| | ||||| ||| |||| ||||||||||  |||
Sbjct  1229  GAGCCAGGCTA-TGTAACGTTTG-CCTAT-AAATACGGAGTACATACAGGAAGGGCGGAA  1285

Query  531   GACGACCTTAAT-TGCTGGAGAAAATCAAGAGAGATTCGTGTAAGGATCCTCAACACCTT  589
             ||||| |||||| |  ||||||   |||||||| || || |||| |||| ||||||| ||
Sbjct  1286  GACGAACTTAATATT-TGGAGATTCTCAAGAGAAATACGAGTAATGATCGTCAACACATT  1344

Query  590   TCCGGTTGTGGCTCTCCGGCTTGAGTAC-CAAGCTGAAAGTCTCAGCTTTTGATACCTGA  648
             ||| ||||||||||| ||||||||| |  |||||||||| |||| ||||| |||||||||
Sbjct  1345  TCCTGTTGTGGCTCTTCGGCTTGAG-AGGCAAGCTGAAAATCTC-GCTTTGGATACCTGA  1402

Query  649   GACATACTGTT  659
             ||| |||||||
Sbjct  1403  GACGTACTGTT  1413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31999151639


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5