BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932569
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19990.1 | Symbols: RPT6A, ATSUG1 | regulatory particle trip... 250 6e-66
AT5G20000.1 | Symbols: | AAA-type ATPase family protein | chr5... 237 4e-62
> AT5G19990.1 | Symbols: RPT6A, ATSUG1 | regulatory particle triple-A
ATPase 6A | chr5:6752006-6755080 FORWARD LENGTH=1560
Length=1560
Score = 250 bits (135), Expect = 6e-66
Identities = 167/181 (92%), Gaps = 7/181 (4%)
Strand=Plus/Plus
Query 114 GAGGAAAATGAATTTGATGCGTGGGATCGATCTGAAAAATATTGCAGAGAAGATGAATGG 173
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1176 GAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGG 1235
Query 174 TGCTTCAGGTGCTGAGCTGAAGGCTGTGTGCACGGAGGCGGGAATGTTTGCACTGCGGGA 233
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1236 CGCTTCAGGTGCTGAGCTGAAGGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGA 1295
Query 234 GAGGAGAGTTCACGTGACCGGTGACACAGGAAGACTTTGAGATGGCGGTGGCGAAGGTAA 293
||||||||| |||||||| ||| || |||||||||||||||||||||| |||||||
Sbjct 1296 GAGGAGAGTACACGTGAC-----ACA-AG-AAGACTTTGAGATGGCGGTGGCCAAGGTAA 1348
Query 294 T 294
|
Sbjct 1349 T 1349
Score = 145 bits (78), Expect = 3e-34
Identities = 95/103 (92%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 14 AGGTTTTGATGGCGACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTCGAA 73
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1046 AGGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTGGAA 1105
Query 74 GGATTGATAGAAAACAATTGAATTTCATAATCTTAATGAAGAG 116
| |||||||| ||| | ||||||||| ||||| ||||||||||
Sbjct 1106 GAATTGATAGGAAA-A-TTGAATTTCCTAATCCTAATGAAGAG 1146
> AT5G20000.1 | Symbols: | AAA-type ATPase family protein | chr5:6756633-6759750
FORWARD LENGTH=1742
Length=1742
Score = 237 bits (128), Expect = 4e-62
Identities = 164/180 (91%), Gaps = 7/180 (4%)
Strand=Plus/Plus
Query 115 AGGAAAATGAATTTGATGCGTGGGATCGATCTGAAAAATATTGCAGAGAAGATGAATGGT 174
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1321 AGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGT 1380
Query 175 GCTTCAGGTGCTGAGCTGAAGGCTGTGTGCACGGAGGCGGGAATGTTTGCACTGCGGGAG 234
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||
Sbjct 1381 GCTTCAGGTGCTGAGCTGAAGGCTGTATGCACGGAGGCGGGCATGTTTGCACTTCGTGAG 1440
Query 235 AGGAGAGTTCACGTGACCGGTGACACAGGAAGACTTTGAGATGGCGGTGGCGAAGGTAAT 294
|||||||| || ||||| | || |||||||||||||||||| ||||||||||||||
Sbjct 1441 AGGAGAGTACATGTGAC---T--CA--GGAAGACTTTGAGATGGCTGTGGCGAAGGTAAT 1493
Score = 145 bits (78), Expect = 3e-34
Identities = 95/103 (92%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 14 AGGTTTTGATGGCGACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTCGAA 73
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1190 AGGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCCGGCCTGGAA 1249
Query 74 GGATTGATAGAAAACAATTGAATTTCATAATCTTAATGAAGAG 116
|||||||||| ||| | ||||||||| ||||| ||||||||||
Sbjct 1250 GGATTGATAGGAAA-A-TTGAATTTCCTAATCCTAATGAAGAG 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13572292230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5