BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932574
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 372 5e-102
> AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174);
BEST Arabidopsis thaliana protein match is: Protein of
unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast
hits to 121 proteins in 7 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353
REVERSE LENGTH=1511
Length=1511
Score = 372 bits (201), Expect = 5e-102
Identities = 453/568 (80%), Gaps = 44/568 (8%)
Strand=Plus/Plus
Query 423 GGCCATCAGTATAGATTGATCGGTTGGGAACCTAAAGATTACAGAGGCGTGGCTTTTCTT 482
|||||| |||| ||| |||||||||||||| || | | | | ||| | ||||||||
Sbjct 521 GGCCATAAGTACAGAATGATCGGTTGGGAA--TATA-A-T-C----GCGCGACTTTTCTT 571
Query 483 CTCCTAAACAAGGAGGGAAG-AGAAGGAGAATTCGTTGTGATTCTC-AATTACACTAACA 540
| ||| ||||||||||||| || ||||||||| |||||| ||||| || | | || |||
Sbjct 572 CGGCTAGACAAGGAGGGAAGAAG-AGGAGAATTTGTTGTGCTTCTCGAAGT-CTCTGACA 629
Query 541 TTTTGATGGTGTTAACAAGTGCGGAAATGAAGTGGAAGCGGCTTGAGAACGTCCCATATG 600
|||| |||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct 630 CTTTGCTGGTGTTAACAAGTGCTGAAATGAGGTGGAAGCAGCTTGAGAACGTCCCATATA 689
Query 601 CTATATGC-TCAGATTTAGTCACTTTTAGAGGAAGATTTTATGCATC-CTTTC-TT-AGC 656
|||||||| | ||| |||||||||||||||| |||||||||||| | |||| || ||
Sbjct 690 CTATATGCGT-TGATATAGTCACTTTTAGAGGCAGATTTTATGCA-CTTTTTCTTTCAGG 747
Query 657 AGAAATACTTTCGTTATCGATCCTTATTCGCTGGAGGTGACTCT-CTTGATGCCCTCACC 715
| |||| | |||||||||||||||||||||||||||||||||| || | || |||||||
Sbjct 748 ACAAAT-C-GTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTTCT-GTTGTCCTCACC 804
Query 716 TCAAAAGCCACTA-AACTA---TAT--GGTTGCATCTGGCAATGATGAACTTTTTCTAGT 769
||| | || | | || || | | |||| ||| |||||| ||||||||||| || ||
Sbjct 805 TCAGGACCCGCGAGAATTACGGTCTCTGGTTCCATATGGCAAAGATGAACTTTTCCTGGT 864
Query 770 TGAGGTAACCATCCTAAATTTTGATATAATAGATTTTAGCCGGTTCA-CAT-GTATAGTG 827
|||||||| ||||| |||| || | ||||||| ||||| ||||| | | | ||| ||||
Sbjct 865 TGAGGTAATCATCCCAAATGATGTTGTAATAGACTTTAGTCGGTT-AGC-TCGTAGAGTG 922
Query 828 AGTAGGCTAGATGAGGAGGGTGGTAAATGGGTTGAGGTCACCGATTTGGGAAACCGTGTG 887
|| ||| |||||||| ||| ||||||||||||||||||| ||||||||| || ||||
Sbjct 923 AGGAGGGTAGATGAGAAGGCTGGTAAATGGGTTGAGGTCGGTGATTTGGGAGACTGTGTA 982
Query 888 TTGTTTATTGGAAACTTTGGAAATGTCTCTTGCTCGGCTAAGGAACTTCCT-GATAGTTG 946
||||| | ||| |||||| |||||||||||||||||||| ||||| | |||
Sbjct 983 TTGTT-A-------CTT-GGAAATCTCTCTTGCTCGGCTAAGGAATTTCCTCGGG-GTTT 1032
Query 947 TGGTCTGAGTGGGAACTCAATCTTGTTC 974
|||| ||| || |||| || | ||||||
Sbjct 1033 TGGTTTGACTGAGAACGCAGTTTTGTTC 1060
Score = 158 bits (85), Expect = 1e-37
Identities = 134/156 (86%), Gaps = 9/156 (6%)
Strand=Plus/Plus
Query 85 ACTGTTTCGATGTTGTTCATGCTCGCTCTGTTTGCAACTCGTGGCGATCCACGTTTCCCT 144
|||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |
Sbjct 274 ACTGTTTCGATGTTGTTCATGCTCGCTCTGTTTGCAGCTTGTGGCGATCCACATTTCC-T 332
Query 145 TTCCTTCTTGCCTA-TTACGCCCAAGTTACTCTCTTCC-TACTTTCGACGAGTTCACTCT 202
|| | || ||| ||||||||||||||||||||||| | | ||| |||| ||| || |
Sbjct 333 TTG-T-CTC-CCTTGTTACGCCCAAGTTACTCTCTTCCCT-CGTTCAACGAATTCCCT-T 387
Query 203 C-GAAAGCAAAGACTTATGCACCCTCGAGAAGGTCC 237
| ||||||||| || | |||||||||||||||||||
Sbjct 388 CAGAAAGCAAAAACATGTGCACCCTCGAGAAGGTCC 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5