BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932576

Length=637
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G42940.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   433    1e-120


> AT3G42940.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Zinc finger, C3HC4 type (RING finger) family protein 
(TAIR:AT2G24480.1); Has 66 Blast hits to 66 proteins in 3 
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr3:15006613-15007194 FORWARD LENGTH=582
Length=582

 Score =  433 bits (234),  Expect = 1e-120
 Identities = 373/438 (85%), Gaps = 17/438 (4%)
 Strand=Plus/Plus

Query  31   AATCACTCAACGTCGATGTTAATGTAACGGCTTTGTTTTTTACTCCATCTTCAGGCTTCT  90
            ||||| |||||| |||||||| |||||| ||| ||| | || ||||||||||||||||||
Sbjct  14   AATCAGTCAACGCCGATGTTAGTGTAACTGCTATGTCTCTTCCTCCATCTTCAGGCTTCT  73

Query  91   TAAACGAACTAATAATCATTCGACCGAGACAAGTCGAGGAATTTCTCATAGACGACAACG  150
            |||||||  |  ||||||||||||| ||| |||||||| || || ||| |||||| ||||
Sbjct  74   TAAACGAGTTGTTAATCATTCGACCTAGAGAAGTCGAGAAAATTATCACAGACGAGAACG  133

Query  151  ATCATAGTGTCACGAGTCTTGGCTCTTACCCGGACTCTCCTCCTTCCGACCCACTAATCT  210
             ||||| ||| || |||||||| ||||||||||| |||||||||||| ||||| | ||||
Sbjct  134  GTCATAATGTAACAAGTCTTGGATCTTACCCGGATTCTCCTCCTTCCAACCCATTTATCT  193

Query  211  ATCTCAAATTCCAA-AGCTTCGAACCAAACTACCTCTATCAACTTGTCCATACC-CAACT  268
             ||||||||||||| | ||||||| |||||||| ||||| | ||||||||| || || ||
Sbjct  194  TTCTCAAATTCCAACA-CTTCGAAGCAAACTACATCTATGACCTTGTCCAT-CCGCATCT  251

Query  269  CCACGATCATGTCTTGTCCAAACAAATATCTGACCAGATTGTTGTTAAAGCACAAGAGCT  328
            ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||
Sbjct  252  CCACGATCATGTCTTGTCCAAACAAATATCTGATCGGATTGTTGTTAAAGCCCAACAGCT  311

Query  329  AAGAAGTGATCAAAGTTCTGATCACTTGCCACAACAACCCTTATTCATGGGAGTCTCCGT  388
            ||||||||||| |||||||||||||||||| |        ||||||||||||||||||||
Sbjct  312  AAGAAGTGATCGAAGTTCTGATCACTTGCC-C--------TTATTCATGGGAGTCTCCGT  362

Query  389  CAGATTTACACGCAAGGTATTCAAAGT-TGTGTCTTGTAATTGTGCTCCATCGACAACAG  447
            || ||||||||||||||| | |||||| | || |||| || |||||||| |||||| |||
Sbjct  363  CATATTTACACGCAAGGTCTACAAAGTCT-TGCCTTGCAACTGTGCTCCGTCGACACCAG  421

Query  448  ATTTGGTGGA-AACAGAG  464
            | |||||||| || ||||
Sbjct  422  ACTTGGTGGAGAA-AGAG  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30743297964


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5