BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932602

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24870.1 | Symbols:  | Plant self-incompatibility protein S1...   368    2e-101


> AT2G24870.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr2:10588660-10589016 REVERSE LENGTH=357
Length=357

 Score =  368 bits (199),  Expect = 2e-101
 Identities = 314/366 (86%), Gaps = 22/366 (6%)
 Strand=Plus/Plus

Query  63   ATGCTTGACCATGTA-TCTGGCTCTGGAAT-ATGGATCGCGAACGAACTCAAATTCAAGA  120
            ||||||||||||||| || ||||||||||| | ||||| | ||||||||||||||||| |
Sbjct  1    ATGCTTGACCATGTATTC-GGCTCTGGAATCA-GGATCACCAACGAACTCAAATTCAATA  58

Query  121  AAATTCTCTGGATTAGATGTTATTCCAAAGATGACAAATTTGGTCCACAAGA-AATACCA  179
            || ||||| ||||| |||||||||||||||||||||||||||||||| || | |||||||
Sbjct  59   AACTTCTCAGGATTGGATGTTATTCCAAAGATGACAAATTTGGTCCA-AAAACAATACCA  117

Query  180  ATCGGAC-AACATGCTGAAATTTCTTTTCGT-ATTAATTTCTGGGC-TACAACGCGTTTT  236
            ||||| | |||||| ||||||   ||||  | |||||||| | ||| ||| |||||||||
Sbjct  118  ATCGG-CAAACATGTTGAAATCAATTTT-ATGATTAATTT-TTGGCGTACGACGCGTTTT  174

Query  237  ATGTGTACA-TT-GAGACAAGGGCCTAACTATAAACATTATCAGGAATTTACAGCATTCA  294
            |||||| || || || |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct  175  ATGTGT-CATTTGGA-ACAAGGACCTAACTATAAACATTATCAGAAATTTACAGCATTCA  232

Query  295  AGCTTTCCGGTTTTATGGATCATGGAAGCCTATGGGACTGGAGAGCAAGAGAAGATGGAA  354
            ||||||| |||||||||||| | ||| |  ||||||||||||||||||||||||||||||
Sbjct  233  AGCTTTCTGGTTTTATGGATGAAGGAGGTATATGGGACTGGAGAGCAAGAGAAGATGGAA  292

Query  355  TCTATTTA-A-ATA-AAGGTGACCAACATATTAGTAA-TCCGGTTAATTTGCA-AAAAGT  409
            |||||||| | | | |||| | | |||||||| | || || | ||||| |||| ||||||
Sbjct  293  TCTATTTAGACAAAGAAGGCGGCAAACATATTGGAAAATC-GATTAATATGCATAAAAGT  351

Query  410  GTATGA  415
            ||||||
Sbjct  352  GTATGA  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21514596572


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5