BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932605
Length=454
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24870.1 | Symbols: | Plant self-incompatibility protein S1... 387 7e-107
AT3G27331.1 | Symbols: | Plant self-incompatibility protein S1... 315 3e-85
AT3G30714.1 | Symbols: | Pseudogene of AT3G26870; self-incompa... 145 4e-34
> AT2G24870.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr2:10588660-10589016 REVERSE LENGTH=357
Length=357
Score = 387 bits (209), Expect = 7e-107
Identities = 318/367 (87%), Gaps = 21/367 (6%)
Strand=Plus/Plus
Query 64 ATGCTTGGCCATGTATCCGGCTCTGGAATCAGGAT-AGCGAACGAACTCAAATTCAAGAA 122
||||||| |||||||| |||||||||||||||||| | | ||||||||||||||||| ||
Sbjct 1 ATGCTTGACCATGTATTCGGCTCTGGAATCAGGATCA-CCAACGAACTCAAATTCAATAA 59
Query 123 ACTTCTCTGGATTAGATGTTATTCCAAAGATGATGTATTCGGTCCAAAAACAATACCAAT 182
||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 60 ACTTCTCAGGATTGGATGTTATTCCAAAGATGACAAATTTGGTCCAAAAACAATACCAAT 119
Query 183 CGGAC-AACATGTTGACATTTCTTTTCGT-ATTAATTTATGGGC-TACGACGCGTTTTAT 239
||| | |||||||||| || |||| | |||||||| | ||| |||||||||||||||
Sbjct 120 CGG-CAAACATGTTGAAATCAATTTT-ATGATTAATTT-TTGGCGTACGACGCGTTTTAT 176
Query 240 GTGTAC-TTT-GAGACAA-GAGCCTAACTATAAACATTATCAAAAATTTACAGCATTCAA 296
|||| | ||| || |||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 177 GTGT-CATTTGGA-ACAAGGA-CCTAACTATAAACATTATCAGAAATTTACAGCATTCAA 233
Query 297 GCTTTTC-GGTGTTACGGATCATGGAGGCCTATGGGACTGGAGAGCAAGAGAAGATGGAA 355
|| |||| ||| ||| |||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 234 GC-TTTCTGGTTTTATGGATGAAGGAGGTATATGGGACTGGAGAGCAAGAGAAGATGGAA 292
Query 356 TATATTTAAACAAAGAAGGTGGCAGACATATTAGGAA--TCCGGTTAATATGCATAAAA- 412
| |||||| |||||||||| |||| ||||||| |||| || | |||||||||||||||
Sbjct 293 TCTATTTAGACAAAGAAGGCGGCAAACATATT-GGAAAATC-GATTAATATGCATAAAAG 350
Query 413 TGTATGA 419
|||||||
Sbjct 351 TGTATGA 357
> AT3G27331.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:10115541-10116278 FORWARD LENGTH=387
Length=387
Score = 315 bits (170), Expect = 3e-85
Identities = 315/383 (82%), Gaps = 18/383 (5%)
Strand=Plus/Plus
Query 59 TTTGCATGCTTGGCCATGTATCCGGC-TCTGGAATCAGGATAGCGAACGAACTCAAATTC 117
|||||||||| | ||||||||| ||| | ||||||||||| |||||||||||||| |
Sbjct 14 TTTGCATGCTAGACCATGTATCAGGCGGC-GGAATCAGGATCTCGAACGAACTCAAAAAC 72
Query 118 AAGAAACTTCTCTGGATTAGATGTTATTCCAAAGATGATGTATTCGGTCCAAAAACAATA 177
||||||||||| ||||| | ||||||||||||||||| ||||| |||||||| | ||||
Sbjct 73 AAGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATAATA 132
Query 178 CCAATCGGACAACATGT-TGACATTTCTTTTCG-TATTAA-TTTATGGGC-TACGACGCG 233
||||||||||||||| | ||| | |||||| | |||||| ||| | ||| ||| |||||
Sbjct 133 CCAATCGGACAACAT-TATGA-AAATCTTTTTGATATTAACTTT-T-GGCATACAACGCG 188
Query 234 TTTTATGTGTACTTTGAGACAAGAG-CCTAACTATAAACATTATCAAAAATTTACAGCAT 292
||||||||||||||||||||||| | ||||||| || ||| ||||| || ||||||||||
Sbjct 189 TTTTATGTGTACTTTGAGACAAG-GTCCTAACTTTAGACACTATCAGAACTTTACAGCAT 247
Query 293 TCAAGCTTTTCGGTGTTACGGATCATGGAGGCCTATGGGACTGGAGAGCAAGAGAAGATG 352
|||||||||||| | | | ||| | ||||| |||||||| ||||||||||||||| |||
Sbjct 248 TCAAGCTTTTCGCTATGGCAGATGAAGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATG 307
Query 353 GAATATATTTAAACAAAGAAGGTGGC-AGACA-TATTAGGAATCCGGTTAATATGCATAA 410
| || |||||||| ||||||| |||| ||| | | ||| || || || ||||||||
Sbjct 308 GGATCTATTTAAAGAAAGAAGCTGGCGAGAAAGTTTTA--AACCCAATTTGGATGCATAA 365
Query 411 A-ATGTATGATTGGATAGATTAA 432
| | ||||| |||||| |||||
Sbjct 366 AGA-GTATGCTTGGATTTATTAA 387
> AT3G30714.1 | Symbols: | Pseudogene of AT3G26870; self-incompatibility
protein-related | chr3:12300955-12301347 REVERSE
LENGTH=393
Length=393
Score = 145 bits (78), Expect = 4e-34
Identities = 185/233 (79%), Gaps = 21/233 (9%)
Strand=Plus/Plus
Query 40 TTTC-TATTCGTTTTCAGTCTTTGCATGCTTGGCCATGTATCCGGCTCTGGAATCAGGAT 98
|||| |||| ||||| |||||||||||||||||||||||||||||| | ||||| || ||
Sbjct 18 TTTCGTATTTGTTTTTAGTCTTTGCATGCTTGGCCATGTATCCGGCGCCGGAATTAGAAT 77
Query 99 AGCGAACGAACTCAAAT-TCAAGAAA-CTTCTCTGGATTAGATGTTATTCCAAAGATGAT 156
| ||||||||||||| | |||||| || || ||||| || || ||||||||| ||||
Sbjct 78 CGTGAACGAACTCAAAAAT-AAGAAAACT-CTTTGGATGAGGTGCTATTCCAAAAATGAC 135
Query 157 GTA-TTCGGTCCAAAAACAATACCAA-TCGGACAACA-TGTT---GAC-ATTTCTTTTCG 209
||| || ||||||| | |||||||| | ||| ||| | || || |||||||| |
Sbjct 136 GTACTT-GGTCCAACAGTAATACCAAAT-GGAGGACAAT-TTACAGATTATTTCTTT-C- 190
Query 210 TATTAATTTATG-GGCTACGACGCGTTTTATGTGTACTTTGAGACAAGAGCCT 261
|| ||||||| || |||||| |||||||||||||| || | ||||| ||||
Sbjct 191 -AT-AATTTATTTGG-TACGACACGTTTTATGTGTACCTTAAAACAAGGGCCT 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21615132070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5