BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932607
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24940.1 | Symbols: AtMAPR2, MAPR2 | membrane-associated pro... 556 4e-158
AT2G24945.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 556 4e-158
> AT2G24940.1 | Symbols: AtMAPR2, MAPR2 | membrane-associated progesterone
binding protein 2 | chr2:10609394-10612232 FORWARD
LENGTH=2839
Length=2839
Score = 556 bits (301), Expect = 4e-158
Identities = 319/327 (98%), Gaps = 3/327 (1%)
Strand=Plus/Plus
Query 1 CAGAGCTTTTTAGAGAAAAA-ATGGAATTCACCGCAGAGCAGCTAAGCCAATACAACGGC 59
|||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 35 CAGAGC--TTTAAAGAAAAAGATGGAATTCACCGCAGAGCAGCTAAGCCAATACAACGGC 92
Query 60 ACCGACGAATCAAAGCCGATCTACGTCGCAATCAAAGGCCGTGTATTCGATGTCACCACC 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 93 ACCGACGAATCAAAGCCGATCTACGTCGCAATCAAAGGCCGTGTGTTCGATGTCACCACC 152
Query 120 GGAAAATCCTTCTACGGCTCCGGAGGCGATTACGCGATGTTCGCCGGAAAAGACGCGAGC 179
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 153 GGAAAATCCTTCTACGGCTCCGGAGGCGATTACTCGATGTTCGCCGGAAAAGACGCGAGC 212
Query 180 AGAGCTTTGGGAAAGATGAGTAAGAACGAAGAAGATGTATCTCCTTCTCTTGAAGGTCTC 239
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 213 AGAGCTTTGGGTAAGATGAGTAAGAACGAAGAAGATGTGTCTCCTTCTCTTGAAGGTCTC 272
Query 240 ACTGAGAAAGAGATCAATACTCTTAATGATTGGGAGACCAAATTTGAAGCTAAGTATCCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ACTGAGAAAGAGATCAATACTCTTAATGATTGGGAGACCAAATTTGAAGCTAAGTATCCT 332
Query 300 GTCGTTGGCCGTGTTGTCTCTTAGGTC 326
|||||||||||||||||||||||||||
Sbjct 333 GTCGTTGGCCGTGTTGTCTCTTAGGTC 359
> AT2G24945.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G36925.1);
Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10609413-10612232
FORWARD LENGTH=2820
Length=2820
Score = 556 bits (301), Expect = 4e-158
Identities = 319/327 (98%), Gaps = 3/327 (1%)
Strand=Plus/Plus
Query 1 CAGAGCTTTTTAGAGAAAAA-ATGGAATTCACCGCAGAGCAGCTAAGCCAATACAACGGC 59
|||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 16 CAGAGC--TTTAAAGAAAAAGATGGAATTCACCGCAGAGCAGCTAAGCCAATACAACGGC 73
Query 60 ACCGACGAATCAAAGCCGATCTACGTCGCAATCAAAGGCCGTGTATTCGATGTCACCACC 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 74 ACCGACGAATCAAAGCCGATCTACGTCGCAATCAAAGGCCGTGTGTTCGATGTCACCACC 133
Query 120 GGAAAATCCTTCTACGGCTCCGGAGGCGATTACGCGATGTTCGCCGGAAAAGACGCGAGC 179
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 134 GGAAAATCCTTCTACGGCTCCGGAGGCGATTACTCGATGTTCGCCGGAAAAGACGCGAGC 193
Query 180 AGAGCTTTGGGAAAGATGAGTAAGAACGAAGAAGATGTATCTCCTTCTCTTGAAGGTCTC 239
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 194 AGAGCTTTGGGTAAGATGAGTAAGAACGAAGAAGATGTGTCTCCTTCTCTTGAAGGTCTC 253
Query 240 ACTGAGAAAGAGATCAATACTCTTAATGATTGGGAGACCAAATTTGAAGCTAAGTATCCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ACTGAGAAAGAGATCAATACTCTTAATGATTGGGAGACCAAATTTGAAGCTAAGTATCCT 313
Query 300 GTCGTTGGCCGTGTTGTCTCTTAGGTC 326
|||||||||||||||||||||||||||
Sbjct 314 GTCGTTGGCCGTGTTGTCTCTTAGGTC 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16085679680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5