BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932608
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24940.1 | Symbols: AtMAPR2, MAPR2 | membrane-associated pro... 510 7e-144
AT2G24945.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 510 7e-144
> AT2G24940.1 | Symbols: AtMAPR2, MAPR2 | membrane-associated progesterone
binding protein 2 | chr2:10609394-10612232 FORWARD
LENGTH=2839
Length=2839
Score = 510 bits (276), Expect = 7e-144
Identities = 378/426 (89%), Gaps = 12/426 (3%)
Strand=Plus/Minus
Query 387 CAAGGACAAGAGAAGAGCAACAACTTTGTATATTTGCTATTCAGAGCCTCTAAGGTATGG 446
||| ||| ||||||| |||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 1510 CAATGACTAGAGAAGCGCAACAACTTTGTATATTTGCTGCTCAGAG-CTCTGAGGTATGG 1452
Query 447 ATAGCGACTAAGATGGAGATTACAAAAGACATATCATGGAGCAAGTTCCTGACAGTGTCG 506
||||||| ||||||||||| ||| ||| ||| |||| ||||||||||||||||||||||
Sbjct 1451 ATAGCGAATAAGATGGAGAGTAC-GAAGCCATTTCATAGAGCAAGTTCCTGACAGTGTCG 1393
Query 507 AAATTTGATCTCCGCTATCATTT-GCGGTTTTGTATTGGGATGAGTTTCTTAGTCGACCA 565
||||||||| |||||||||||| | |||| ||| ||||| |||||||||||||||| ||
Sbjct 1392 AAATTTGATGACCGCTATCATTTAG-GGTTATGTTTTGGGTTGAGTTTCTTAGTCGA-CA 1335
Query 566 -GGAGAACAAAGTTGTAGTGTCTTGTAATCACCCCCAGGTTCTCCAACAACATTTTGACA 624
||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1334 TAGAGAACAAAGTTGTAGTGTCTTGTAATCACCCCG-GGTTCTCCAACAACGTTTT-ACA 1277
Query 625 AATTGTGGGAAAGAATAAATACATACATAAGGATCAACATGGTGCTGAAACTCCTACCCC 684
||||||||||||| |||||||| ||| | |||||||||||||||| ||| ||||||||||
Sbjct 1276 AATTGTGGGAAAGGATAAATACCTACCTGAGGATCAACATGGTGCCGAATCTCCTACCCC 1217
Query 685 ACC---TCTCCTCACTTATGTTCCAGGTTTGGCTCAAATCCAACAAGGTATCTAGTTCTT 741
|| |||||||| |||||||| |||||||| ||||||||| ||||||| |||||||||
Sbjct 1216 TCCACGTCTCCTCATTTATGTTCTAGGTTTGGTTCAAATCCAGCAAGGTAGCTAGTTCTT 1157
Query 742 GGAGGAGGTGGTTTGTGCATTGTTT-ATTTAAAATGCCAAAATAATATCTAAGTTAGGAT 800
||||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 1156 GGAGGTGGTGGTTTGTGCATTTTTTTATTTAAAATGTCAAAATAATATCTAAGTTAGGAT 1097
Query 801 GGCTCT 806
| ||||
Sbjct 1096 GCCTCT 1091
> AT2G24945.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G36925.1);
Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10609413-10612232
FORWARD LENGTH=2820
Length=2820
Score = 510 bits (276), Expect = 7e-144
Identities = 378/426 (89%), Gaps = 12/426 (3%)
Strand=Plus/Minus
Query 387 CAAGGACAAGAGAAGAGCAACAACTTTGTATATTTGCTATTCAGAGCCTCTAAGGTATGG 446
||| ||| ||||||| |||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 1491 CAATGACTAGAGAAGCGCAACAACTTTGTATATTTGCTGCTCAGAG-CTCTGAGGTATGG 1433
Query 447 ATAGCGACTAAGATGGAGATTACAAAAGACATATCATGGAGCAAGTTCCTGACAGTGTCG 506
||||||| ||||||||||| ||| ||| ||| |||| ||||||||||||||||||||||
Sbjct 1432 ATAGCGAATAAGATGGAGAGTAC-GAAGCCATTTCATAGAGCAAGTTCCTGACAGTGTCG 1374
Query 507 AAATTTGATCTCCGCTATCATTT-GCGGTTTTGTATTGGGATGAGTTTCTTAGTCGACCA 565
||||||||| |||||||||||| | |||| ||| ||||| |||||||||||||||| ||
Sbjct 1373 AAATTTGATGACCGCTATCATTTAG-GGTTATGTTTTGGGTTGAGTTTCTTAGTCGA-CA 1316
Query 566 -GGAGAACAAAGTTGTAGTGTCTTGTAATCACCCCCAGGTTCTCCAACAACATTTTGACA 624
||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1315 TAGAGAACAAAGTTGTAGTGTCTTGTAATCACCCCG-GGTTCTCCAACAACGTTTT-ACA 1258
Query 625 AATTGTGGGAAAGAATAAATACATACATAAGGATCAACATGGTGCTGAAACTCCTACCCC 684
||||||||||||| |||||||| ||| | |||||||||||||||| ||| ||||||||||
Sbjct 1257 AATTGTGGGAAAGGATAAATACCTACCTGAGGATCAACATGGTGCCGAATCTCCTACCCC 1198
Query 685 ACC---TCTCCTCACTTATGTTCCAGGTTTGGCTCAAATCCAACAAGGTATCTAGTTCTT 741
|| |||||||| |||||||| |||||||| ||||||||| ||||||| |||||||||
Sbjct 1197 TCCACGTCTCCTCATTTATGTTCTAGGTTTGGTTCAAATCCAGCAAGGTAGCTAGTTCTT 1138
Query 742 GGAGGAGGTGGTTTGTGCATTGTTT-ATTTAAAATGCCAAAATAATATCTAAGTTAGGAT 800
||||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 1137 GGAGGTGGTGGTTTGTGCATTTTTTTATTTAAAATGTCAAAATAATATCTAAGTTAGGAT 1078
Query 801 GGCTCT 806
| ||||
Sbjct 1077 GCCTCT 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39232868807
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5