BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932616
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37350.1 | Symbols: | Serine/threonine-protein kinase Rio1 ... 2529 0.0
AT2G24990.1 | Symbols: | Serine/threonine-protein kinase Rio1 ... 2497 0.0
> AT5G37350.1 | Symbols: | Serine/threonine-protein kinase Rio1
| chr5:14792984-14796027 FORWARD LENGTH=1848
Length=1848
Score = 2529 bits (1369), Expect = 0.0
Identities = 1533/1613 (95%), Gaps = 8/1613 (0%)
Strand=Plus/Plus
Query 14 aaaaaaaaGTGATGGAGGAAGTAGTGGTAGCAGCAGAGCCACCACCGACGATTCCTCCGG 73
||||| |||||||||||||||||||||||| |||||||||||||||| |||| ||||
Sbjct 43 AAAAACAAGTGATGGAGGAAGTAGTGGTAGTTGCAGAGCCACCACCGAAGATTACTCCCT 102
Query 74 TTGTGGAATACGAAGAGGATATTGAAGAAGATGACGACGACGACGATCTTTCTCTTTCGT 133
|||||||||||||||| || || |||||| || ||||| ||||| || |||||||
Sbjct 103 TTGTGGAATACGAAGAAGAGCTT---GAAGAT---GATGACGATGATCTCTCGCTTTCGT 156
Query 134 CAGATTCCGATATCGCTGAAGCTCTTGATTGGCTAGATGGTAAAGACGATGACGAGCTAA 193
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 157 CAGATTCCGATATCGCTGAAGCTCTTGATTGGCTAGACGGTAAAGACGATGACGAGCTAA 216
Query 194 TCGGTGGTGGCTTCTCTCTTCATGCTCGTCGTCCTAATGCTCACGGTGGACATGGTTCAC 253
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TTGGTGGTGGCTTTTCTCTTCATGCTCGTCGTCCTAATGCTCACGGTGGACATGGTTCAC 276
Query 254 GTCCTAACTCTAGTGCTCTTCAGCCTATATCAAATAAGGCACAAAAGCTTACTAGTCATG 313
| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |
Sbjct 277 GCCCTAACTCTAGTGCTCTTCAGCCTATTTCAAATAAGGCCCAGAAGCTTACTAGTCACG 336
Query 314 TTCGTGCTTCTCCTTTGGAGGGATGGGAAGGAAGAGTTAACGTTGGGATGTCGAATTCTG 373
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 337 TTCGTGCTTCTCCTTTGGAGGGATGGGAAGGAAGAGTTAAAGTTGGGATGTCGAATTCTG 396
Query 374 TGACAACTGCGATTCGTGGAAGTCTTAGAGAGACAGAGATTGGGAGAAGTAGGAATACAG 433
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 397 TGACAACTGCGATTCGTGGAAGTCTTAGAGATACAGAAATTGGGAGAAGTAGGAATACTG 456
Query 434 ATAAAGCTGACCGGGCAACAGTTGAACAGGCTCTTGATCCAAGGACGCGTATGGTTTTGT 493
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 457 ATAAAGCGGACCGGGCAACTGTTGAACAGGCTCTTGATCCAAGGACGCGTATGGTATTGT 516
Query 494 TTAGAATGCTTAATCGGGGTGTGTTTAACGATGTTAATGGATGTATTTCGACAGGCAAAG 553
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 517 TTAGAATGCTTAATAGGGGTGTGTTTAACGATGTTAATGGCTGTATCTCGACAGGCAAAG 576
Query 554 AAGCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACA 613
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AAGCAAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACA 636
Query 614 AGACATCGGTTCTGGTTTTCAAGGATCGAGATCGATATGTACAAGGAGATTACCGTTTTA 673
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 AGACATCTGTTCTGGTTTTCAAGGATCGAGATCGATATGTACAAGGAGATTACCGTTTTA 696
Query 674 GATATGGCTACTGTCGCCACAATCCCCGGAAGATGGTTAAGACGTGGGCTGAAAAAGAAC 733
|||||||||||||||| |||||||| || |||||||| ||||| ||||||||||||||||
Sbjct 697 GATATGGCTACTGTCGTCACAATCCTCGAAAGATGGTGAAGACATGGGCTGAAAAAGAAC 756
Query 734 AGAGAAATCTTAAGAGGCTTCATGCAGCAGGAATTAGGTGTCCAGCTGTTATACTTCTAC 793
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 AGAGAAATCTCAAGAGGCTTCATGCAGCAGGAATTAGGTGTCCAGCTGTTATACTTCTAC 816
Query 794 GCCTTCATGTTCTAGTCATGGAGTTTATAGGGAGGGATGGTTGGGCTGCACCGCGTCTCA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GCCTTCATGTTCTAGTCATGGAGTTTATAGGGAGGGATGGTTGGGCTGCACCGCGTCTCA 876
Query 854 AGGATGCTGCATTATCACTGGACAAGTTGCGCGAGTGTTACCTAGAGTTGATAATTCAAA 913
||||||| ||||| || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 877 AGGATGCCGCATTGTCTCTGGACAAGTTGCGCGAGTGTTACTTAGAGTTGATAATTCAAA 936
Query 914 TGCGAGTATTATATCAGAAGTGCAAATTGGTGCATGGGGATCTCAGTGAGTATAACATAC 973
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 937 TGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATAC 996
Query 974 TTTATTTTGAGGGGCACCTTTATATAATTGATGTTTCTCAATCTGTGGATCTGGACCATC 1033
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 TTTATTTTGAAGGGCACCTTTATATAATTGATGTTTCTCAATCTGTGGATCTGGACCATC 1056
Query 1034 CTCTTGCACTCAACTTTCTACGGGAAGATTGTGACCACGTCTCAGATTTTTTCAAGAAAC 1093
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1057 CTCTTGCACTCAACTTTCTACGGGAAGATTGTGACCATGTCTCGGATTTTTTCAAAAAAC 1116
Query 1094 ATGGTGTGGCTGTCATGACAATACGGGAGCTATTTGACTTCATAGTTGACCCGACAATTT 1153
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1117 ATGGTGTGGCTGTTATGACAATACGAGAGCTATTTGACTTCATAGTTGACCCGACAATTT 1176
Query 1154 CAGACGAAAATGTTGATAGCTATTTGGAAGAGGTCCAACGAAAAGTTATAGAGCGAGGAG 1213
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1177 CAGACGAAAATGTTGATAGCTATTTGGAAGAGGTCCAACGGAAAGTTATAGAGCGAGGAG 1236
Query 1214 AGATATCCGTAGAGGATGAAATCGCAGATTCAGTATTCATGAAGTCATACATACCAAAAT 1273
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 1237 AGATATCCGTAGAGGATGAAATCGCGGATTCTGTATTCATGAAGTCATACATACCGAAAT 1296
Query 1274 CTCTGGATGCTGTGAACAACCCGGAGGCTGACGTGGCGAAGATAACAAGCGGGCAGGACA 1333
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1297 CTCTGGATGCTGTGAACAACCCAGAGGCTGATGTAGCGAAGATAACAAGCGGGCAGGACA 1356
Query 1334 CAGGAGACATGCTGTACCAAACGATAACGGGGCTGAAAGATGCTCTTCCTaaagtagaag 1393
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1357 CAGGAGACATGCTGTACCAAACGATAACGGGGCTTAAGGATGCTCTTCCTAAAGTAGACG 1416
Query 1394 agcagcaaaaagaggtgaatgctgcagaggaagaagaggaggaagaagaag-aagaagac 1452
||||||||| |||||||||||||| |||||||||||| || || ||||| | ||| ||
Sbjct 1417 AGCAGCAAATAGAGGTGAATGCTGAAGAGGAAGAAGAAGAAGAGGAAGAGGGAAGTGGA- 1475
Query 1453 ggagaaagcgaagaagagagtgaagaagaattgggtcctgaagacaagaaagctgcaagg 1512
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1476 GAAGAAAGCGAAGAAGAGAGTGAAAAAGAATTGGGTCCTGAAGACAAGAAAGCTGCAAGG 1535
Query 1513 aaagagcacaagaagaaagtgaaagaGGAGAAACGAGAGTCTAGGAAGACGAAAACACCC 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 AAAGAGCACAAGAAGAAAGTGAAAGAGGAGAAACGAGAGTCTAGGAAGACGAAAACACCC 1595
Query 1573 AAATCTGTCAAGAAGCGAAAGAAGAAAGTCTCTAAACCCCACAAGACTCGTTA 1625
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1596 AAATCTGTCAAGAAGCGAAAAAAGAAAGTCTCTAAACCCCACAAGACTCGTTA 1648
> AT2G24990.1 | Symbols: | Serine/threonine-protein kinase Rio1
| chr2:10625214-10628299 FORWARD LENGTH=1685
Length=1685
Score = 2497 bits (1352), Expect = 0.0
Identities = 1546/1637 (94%), Gaps = 23/1637 (1%)
Strand=Plus/Plus
Query 7 aaaaaaaaaaaaaaaGTGATGGAGGAAGTAGTGGTAGCAGCAGAGCCACCACCGACGATT 66
|||| |||||||||| ||||||||||||||| ||| | ||||||||||||| ||||||
Sbjct 55 AAAAGAAAAAAAAAA-CAATGGAGGAAGTAGTGTTAGTAACAGAGCCACCACCCACGATT 113
Query 67 CCTCCGGTTGTGGAATACGAAGAGGATATTG-AAGAAGATGACGACGACGACGATCTTTC 125
|||||||| || ||||||||||| | | | | || |||||||||||||||||||| ||
Sbjct 114 CCTCCGGTAGTAGAATACGAAGA--AGA--GCATGACGATGACGACGACGACGATCTCTC 169
Query 126 TCTTTCGTCAGATTCCGATATCGCTGAAGCTCTTGATTGGCTAGATGGTAAAGACGATGA 185
|||||| || |||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 170 TCTTTCATCGGATTCCGATATCGCTGAAGCTCTTGATTGGCTCGACGGAAAAGACGATGA 229
Query 186 CGAGCTAATCGGTGGTGGCTTCTCTCTTCATGCTCGTCGTCCTAATGCTCACGGTGGACA 245
||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 230 CGAGCTAATAGGTGGTGGCTTTTCCCTCCATGCTCGTCGTCCTAATGCTCACGGTGGACA 289
Query 246 TGGTTCACGTCCTAACTCTAGTGCTCTTCAGCCTATATCAAATAAGGCACAAAAGCTTAC 305
|||||||||||||||||||||| ||||||| |||||||||||||| || || ||||||||
Sbjct 290 TGGTTCACGTCCTAACTCTAGTTCTCTTCAACCTATATCAAATAAAGCCCAGAAGCTTAC 349
Query 306 TAGTCATGTTCGTGCTTCTCCTTTGGAGGGATGGGAAGGAAGAGTTAACGTTGGGATGTC 365
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 350 TAGTCATGTTCGTGCTTCTCCTTTAGAGGGATGGGAAGGAAGAGTTAAAGTTGGGATGTC 409
Query 366 GAATTCTGTGACAACTGCGATTCGTGGAAGTCTTAGAGAGACAGAGATTGGGAGAAGTAG 425
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 410 GAATTCTGTGACAACTGCGATTCGTGGAAGTCTTAGAGATACAGAAATTGGGAGAAGTAG 469
Query 426 GAATACAGATAAAGCTGACCGGGCAACAGTTGAACAGGCTCTTGATCCAAGGACGCGTAT 485
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 470 GAATACTGATAAAGCTGACCGGGCAACAGTTGAACAGGCTCTTGATCCAAGGACTCGTAT 529
Query 486 GGTTTTGTTTAGAATGCTTAATCGGGGTGTGTTTAACGATGTTAATGGATGTATTTCGAC 545
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 530 GGTTTTGTTTAGAATGCTTAACCGGGGTGTGTTTAACGATGTTAATGGATGTATTTCGAC 589
Query 546 AGGCAAAGAAGCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 AGGCAAAGAAGCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAA 649
Query 606 AGTGTACAAGACATCGGTTCTGGTTTTCAAGGATCGAGATCGATATGTACAAGGAGATTA 665
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 650 AGTGTACAAGACATCTGTTCTGGTTTTTAAGGATCGAGATCGATATGTACAAGGAGATTA 709
Query 666 CCGTTTTAGATATGGCTACTGTCGCCACAATCCCCGGAAGATGGTTAAGACGTGGGCTGA 725
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 710 CCGTTTTAGATATGGCTACTGTCGTCACAATCCCCGGAAGATGGTGAAGACATGGGCTGA 769
Query 726 AAAAGAACAGAGAAATCTTAAGAGGCTTCATGCAGCAGGAATTAGGTGTCCAGCTGTTAT 785
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 770 AAAAGAACAGAGAAATCTTAAGAGGCTTCATGCAGCTGGAATTAGGTGTCCAGCTGTTAT 829
Query 786 ACTTCTACGCCTTCATGTTCTAGTCATGGAGTTTATAGGGAGGGATGGTTGGGCTGCACC 845
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 830 ACTTCTTCGCCTTCATGTGCTAGTCATGGAGTTTATAGGGAGGGATGGTTGGGCTGCACC 889
Query 846 GCGTCTCAAGGATGCTGCATTATCACTGGACAAGTTGCGCGAGTGTTACCTAGAGTTGAT 905
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 890 GCGTCTCAAGGATGCTGCATTATCTCTAGACAAGTTGCGCGAGTGCTACCTAGAGTTGAT 949
Query 906 AATTCAAATGCGAGTATTATATCAGAAGTGCAAATTGGTGCATGGGGATCTCAGTGAGTA 965
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 950 AATTCAAATGCGAGTATTATATCAGAAGTGCAAATTGGTGCATGGAGATCTCAGTGAGTA 1009
Query 966 TAACATACTTTATTTTGAGGGGCACCTTTATATAATTGATGTTTCTCAATCTGTGGATCT 1025
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1010 TAACATACTTTATTTTGAGGGGCACCTTTACATAATTGATGTTTCTCAATCTGTGGATCT 1069
Query 1026 GGACCATCCTCTTGCACTCAACTTTCTACGGGAAGATTGTGACCACGTCTCAGATTTTTT 1085
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1070 GGACCATCCTCTTGCACTCAACTTTCTACGGGAAGATTGTGACCATGTCTCGGATTTTTT 1129
Query 1086 CAAGAAACATGGTGTGGCTGTCATGACAATACGGGAGCTATTTGACTTCATAGTTGACCC 1145
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CAAAAAACATGGTGTGGCTGTCATGACAATACGGGAGCTATTTGACTTCATAGTTGACCC 1189
Query 1146 GACAATTTCAGACGAAAATGTTGATAGCTATTTGGAAGAGGTCCAACGAAAAGTTATAGA 1205
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GGCAATTACAGACGAAAATGTTGATAGCTATTTGGAAGAGGTCCAACGAAAAGTTATAGA 1249
Query 1206 GCGAGGAGAGATATCCGTAGAGGATGAAATCGCAGATTCAGTATTCATGAAGTCATACAT 1265
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1250 GCGAGGAGAGATATCCGTAGAGGATGAAATCGCGGATTCAGTATTCATGAAGTCATACAT 1309
Query 1266 ACCAAAATCTCTGGATGCTGTGAACAACCCGGAGGCTGACGTGGCGAAGATAACAAGCGG 1325
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1310 ACCGAAATCTCTGGATGCTGTGAACAACCCTGAGGCTGACGTGGCTAAGATAACAAGCGG 1369
Query 1326 GCAGGACACAGGAGACATGCTGTACCAAACGATAACGGGGCTGAAAGATGCTCTTCCTaa 1385
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 1370 GCAGGACACAGGAGACATGCTATACCAAACGATAACGGGGCTTAAGGATGCTCTTCCTAA 1429
Query 1386 agtagaagagcagcaaaa-agaggtgaatgctgcagaggaagaagagga-gga-ag-aag 1441
| ||||||||||| |||| ||||||||||| || |||| |||||||||| ||| || |||
Sbjct 1430 AATAGAAGAGCAG-AAAATAGAGGTGAATGATGAAGAGAAAGAAGAGGAAGGAGAGGAAG 1488
Query 1442 aagaaga---agac-g-ga-gaa--a-gcga--a-gaagagagtgaagaagaattgggtc 1489
||||||| ||| | || ||| | | || | |||||||||||||||||||||||||
Sbjct 1489 AAGAAGACGGAGAAAGTGAAGAAGGAAGTGAGGAAGAAGAGAGTGAAGAAGAATTGGGTC 1548
Query 1490 ctgaagacaagaaagctgcaaggaaagagcacaagaagaaagtgaaagaGGAGAAACGAG 1549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 ATGAAGACAAGAAAGCTGCAAGGAAAGAGCACAAGAAGAAAGTGAAAGAGGAGAAACGAG 1608
Query 1550 AGTCTAGGAAGACGAAAACACCCAAATCTGTCAAGAAGCGAAAGAAGAAAGTCTCTAAAC 1609
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 AGTCTAGGAAGACGAAGACACCCAAATCTGTCAAGAAGCGAAAGAAGAAAGTCTCTAAAC 1668
Query 1610 CCCACAAGACTCGTTAA 1626
| |||||||||||||||
Sbjct 1669 CACACAAGACTCGTTAA 1685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81324882900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5