BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932623
Length=2484
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25140.1 | Symbols: HSP98.7, CLPB-M, CLPB4 | casein lytic pr... 2006 0.0
AT3G32375.1 | Symbols: | pseudogene, putative heat shock prote... 640 0.0
AT2G25030.1 | Symbols: | pseudogene, HSP100/ClpB, putative, si... 579 6e-164
AT3G32387.1 | Symbols: | pseudogene, putative clpB heat shock ... 241 3e-62
AT3G31906.1 | Symbols: | pseudogene, ATP-dependent CLPB protei... 211 2e-53
AT3G32383.1 | Symbols: | transposable element gene | chr3:1331... 195 2e-48
> AT2G25140.1 | Symbols: HSP98.7, CLPB-M, CLPB4 | casein lytic
proteinase B4 | chr2:10697703-10702152 REVERSE LENGTH=3223
Length=3223
Score = 2006 bits (1086), Expect = 0.0
Identities = 1827/2179 (84%), Gaps = 73/2179 (3%)
Strand=Plus/Plus
Query 315 AAGCACTTGCAAAGTATGGAAATGATTTAACTGAGATCGCTAGACAAGGAAAACTACG-T 373
||||||||| ||||||||||||||||||||||||||| ||||||| ||| || || | |
Sbjct 873 AAGCACTTGAAAAGTATGGAAATGATTTAACTGAGATGGCTAGACGAGGGAAGCT-GGAT 931
Query 374 CCTGTGATCAGACGGAATGATGAAATTCGGAGTTGCATCCAAATACTATGCAGGATG-AC 432
||||| || | ||| ||||||||||| || |||||||||| ||| |||| |||| | ||
Sbjct 932 CCTGTCATTGGGCGGGATGATGAAATTAGGCGTTGCATCCAGATATTATGTAGGA-GAAC 990
Query 433 AAAAAGCAATCCTATTATCGTTGGTGAACCAGGTGTAGGAAAAACTGCTATTGCAGAAGG 492
||||| |||||| |||| |||||||||| |||||||| |||||||| |||||||| ||
Sbjct 991 AAAAAACAATCCGGTTATTATTGGTGAACCTGGTGTAGGGAAAACTGCAATTGCAGAGGG 1050
Query 493 GTTGGCGGAGCGAATTGTACGACGG-GATGTCCCAGAACCTCTCTTGAATCGGAAGTTGA 551
|||||| | |||||||| ||| || |||||||| ||||||||| ||||||| |||||||
Sbjct 1051 GTTGGCTCAACGAATTGTGCGA-GGAGATGTCCCTGAACCTCTCATGAATCGAAAGTTGA 1109
Query 552 TATCTCTCGACATGAGTTC-GTTGCTTGCTGGTGCCGTATATAC-AGGAGAGTTTGCGGG 609
|||||||||||||| |||| || |||||||||||| || | | |||||| |||| ||
Sbjct 1110 TATCTCTCGACATGGGTTCACTT-CTTGCTGGTGCCAAAT-TTCGAGGAGATTTTG-AGG 1166
Query 610 A-AGGCTGAACGCAATACTGAAGGAAGTAAT-TGCTTCTAATGGGCAGATAATCTTGTTC 667
| ||| |||| ||| || |||||||||| || |||||| |||||||| | |||||||||
Sbjct 1167 AGAGGTTGAAAGCAGTAATGAAGGAAGT-ATCTGCTTCCAATGGGCAAACAATCTTGTTT 1225
Query 668 ATAGATGAAATCCACTCTCTTGTTCGT-CA--AGC----G-TCTAG---TCG-TG-GAG- 713
|| ||||| |||||| || ||||| || || ||| | | || | | || ||
Sbjct 1226 ATTGATGAGATCCACACTGTTGTTGGTGCAGGAGCTATGGATGGAGCAATGGATGCAAGC 1285
Query 714 -ACCTCTTGAAACCAATGCTTGGAAAAGGTGAACTGCGATGCATTGGTGCAACTACGCAG 772
||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |
Sbjct 1286 AACCTCTTGAAACCAATGCTTGGACGAGGTGAACTGAGATGCATTGGTGCAACTACACTG 1345
Query 773 ACTGAATACCGCGAATACATAGAAG-ACGATCCAGCTTTGGCA-CGTAGGTTTCAGA-AA 829
|| ||||||||| |||| |||| || | || |||||| | | | ||||||||||| | ||
Sbjct 1346 ACCGAATACCGCAAATATATAG-AGAAAGACCCAGCTCTAG-AGCGTAGGTTTCA-ACAA 1402
Query 830 GTGTTATGTGATCAACCATCTGTTGAAAATACCATCTCGATTCTTCGTGGGTTAAGAGAG 889
|||||||||| ||| || ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1403 GTGTTATGTGTTCAGCCCTCTGTTGAAGATACAATCTCGATTCTTCGTGGGTTAAGAGAG 1462
Query 890 CGGTACGAGTTACACCATGGTGTTAAGATATCAGATGGTTCCCTTGTTTCAGCAGCGGTT 949
|||||||||||||||||||| |||| ||||||||| || |||||||||||||||| |||
Sbjct 1463 CGGTACGAGTTACACCATGGCGTTACTATATCAGATAGTGCCCTTGTTTCAGCAGCAGTT 1522
Query 950 -TTGGCAGACCGCTACATCACTGAACGTTTTTTGCCAGATAAAGCTATTGATCTTGTTGA 1008
||| |||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||
Sbjct 1523 CTTG-CAGACCGCTACATCACCGAACGCTTTCTGCCAGACAAAGCTATTGATCTTGTTGA 1581
Query 1009 TGAAGCTGCTGCAAAGCTGAAGATAGAGATCACTACTAAACCAACAGAAATCGATGAAAT 1068
||||||| ||||||||||||||| ||||||||| |||||||||| ||| | |||| |||
Sbjct 1582 CGAAGCTGGTGCAAAGCTGAAGATGGAGATCACTTCTAAACCAACTGAACTAGATGGAAT 1641
Query 1069 AGACAGAGATGTGACCACACTAGAGATGGAAAAGCTTTCT-TTGAAAAAGGATAGTGATA 1127
||| |||| ||||| || | | |||||||||||||||||| || ||||| |||| |||||
Sbjct 1642 AGATAGAGCTGTGATCAAATTGGAGATGGAAAAGCTTTCTCTT-AAAAATGATACTGATA 1700
Query 1128 AAGCTTCTAAAGAACGGCTAAAGAAGATTGAGAATGATTTGACCACACTCAAGGATAAAC 1187
|||| ||||||||||||||| ||||||||||||||||| || |||| ||||| | ||||
Sbjct 1701 AAGCATCTAAAGAACGGCTACAGAAGATTGAGAATGATCTGTCCACGCTCAAACAGAAAC 1760
Query 1188 A-AAAGAAATTTA-GTAAGCTATTGGAAGAA-GAAAAGTTTCTAATTACTAAAATACGTT 1244
| |||||| | | || | || ||| ||| ||||||| || || || ||||||||||
Sbjct 1761 AGAAAGAACTCAATGTC--CAATGGGA-GAAAGAAAAGTCGCTCATGACAAAAATACGTT 1817
Query 1245 CATTTAAAGAAGAGATCGATGGAGTGAACCAGGAAATTGTATCAGCTGTATGTGAATCTG 1304
| ||||| |||||||| ||| |||| |||| ||||||| ||| |||| | |||||| ||
Sbjct 1818 CGTTTAAGGAAGAGATTGATCGAGTTAACCTCGAAATTGAATCTGCTGAACGTGAATATG 1877
Query 1305 ATCAAAACCGTGTTGATGATCTTAAGTATGGAACACTTACGTCCCTCGAACGCCAGTTAG 1364
||| |||||| | || ||| || ||||||||||||||| ||||||| ||||||| ||||
Sbjct 1878 ATCTAAACCGAGCTGCTGAGCTGAAGTATGGAACACTTTTGTCCCTCCAACGCCAATTAG 1937
Query 1365 AAGAAGCTGAGAAGAATCTCATGAATTTCCGAGAGTCTC-ACCAGTCGCTAGTACGAGAA 1423
||||||||||||||||||||| |||||||||| ||| | || |||| ||| | ||||||
Sbjct 1938 AAGAAGCTGAGAAGAATCTCACGAATTTCCGACAGTTTGGAC-AGTCACTACTCCGAGAA 1996
Query 1424 GAG-TTAACAGATCGTGACATAGCATCAATAGTAAGCAAGAAGACTGGTATTCCACAATC 1482
| | ||| | |||| |||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 1997 GTGGTTACC-GATCTTGACATAGCAGAAATAGTAAGCAAGTGGACTGGTATTCCACTATC 2055
Query 1483 AAATCTTCAGAAATCAGAGAGAGAAAAGCTGGTCATGTTGGATCAAGTGCTCCATGAGAG 1542
||||||||| ||||||||||||| ||| | || |||||||| |||||||||| | ||
Sbjct 2056 TAATCTTCAGCAATCAGAGAGAGAGAAGTTAGTGATGTTGGAAGAAGTGCTCCACCATAG 2115
Query 1543 AATTGTTGGTCAAGACATGGCTGTAGAATTAGTTGCAGATGCTATCCGTTGTTCGAAGG- 1601
| || |||||||||||||||||||| ||| ||| |||||||||||||| |||| ||||
Sbjct 2116 AGTTATTGGTCAAGACATGGCTGTAAAATCAGTAGCAGATGCTATCCGACGTTC-AAGGG 2174
Query 1602 CTGGTCTTTCTGATCCTAACCGACCTATAGCCAGTTTTATGTTCATGGGTCCAACAGGTG 1661
|||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 2175 CTGGTCTTTCTGATCCTAACCGCCCAATAGCTAGTTTCATGTTCATGGGTCCAACAGGTG 2234
Query 1662 TTGGTAAGACCGAACTTGCCAAGGCTCTAGCTGGATACCTTTTCAACAATGAAAATGCAA 1721
||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct 2235 TTGGTAAGACCGAGCTTGCCAAGGCTCTAGCGGGATACCTTTTTAACACTGAAAATGCAA 2294
Query 1722 TAGTGAGGATTGATATGAGTGAGTACATGGAAAAAGTCTCGGTCACACGGCTCATTGGCG 1781
|||||||| | |||||||||||||||||||||||| ||| ||| ||||||| |||| |
Sbjct 2295 TAGTGAGGGTCGATATGAGTGAGTACATGGAAAAACACTCAGTCTCACGGCTTGTTGGTG 2354
Query 1782 CATGTCCTGGCTATGTCGGGTAT-AGTGAAGGTGGGCAACTAACTGAAGCTGTAAGGAGG 1840
|| |||||||||||||| ||| | ||||||||||| ||||||||| ||| | |||
Sbjct 2355 CACCACCTGGCTATGTCGGTTATGAA-GAAGGTGGGCAGTTAACTGAAGTTGTTCGCAGG 2413
Query 1841 AGACCTTATTCAGTGGTTCTGTTTGATGAGATCGAGAAAGCTCACCCTGATGTCTTCAAT 1900
|||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2414 AGACCTTACTCGGTGGTTCTGTTTGATGAGATCGAGAAAGCCCACCCTGATGTCTTTAAT 2473
Query 1901 GTCTTGCTACAACTACTAGATGATGGAAGAATAACCGATTCTCATGGTAGGACAGTAAGT 1960
||||||||||||| ||||| |||||||||||||| |||||||| || ||||| ||||||
Sbjct 2474 ATCTTGCTACAACTGCTAGACGATGGAAGAATAACTGATTCTCAAGGAAGGACCGTAAGT 2533
Query 1961 TTTACAAACTGCT-TTGTCATAATGACGTCTAATATAGGATCTCAACACATACTTGAGAC 2019
|| | |||||| | |||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct 2534 TTCAAAAACTG-TGTTGTAATTATGACGTCGAATATAGGATCTCACCACATACTTGAGAC 2592
Query 2020 TATCCGCAACAATGAAGATAGCAAAGAAGAAGTTTATGAAATGATGAAGAAACAAGTTGT 2079
|||||||||||||||| |||||||||| ||||||||| || |||||| ||||||||
Sbjct 2593 CCTCCGCAACAATGAAGACAGCAAAGAAGCAGTTTATGAGATAATGAAGCGGCAAGTTGT 2652
Query 2080 GGAGTTAGCAAGA-AAAACTTTCAAGCCAGAGTTCATGAATAGAATTGATGAATACATAG 2138
||||||||||||| |||| ||||| ||| ||||||||||| |||||||| || |||||||
Sbjct 2653 GGAGTTAGCAAGACAAAA-TTTCAGGCCTGAGTTCATGAACAGAATTGACGAGTACATAG 2711
Query 2139 TTTTCCAGCCTTTGGATTC-AAGAGAAATATCCAAAATCGTGGAGTTACAGATGAGACAA 2197
|||||||||| ||||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct 2712 TTTTCCAGCCGCTGGATTCTAAC-GAAATCTCCAAAATCGTAGAGTTACAGATGAGACGG 2770
Query 2198 TTAAAGAAGAGGTTGGAACAGAATAAAAT-AAATCTTGAATGCACGAAAGAAGCGGTGGA 2256
| ||||| || ||||||||||| ||||| ||| ||| | | || ||||| || |||||
Sbjct 2771 GTGAAGAATAGCTTGGAACAGAAGAAAATCAAA-CTTCAGTATACCAAAGAGGCAGTGGA 2829
Query 2257 TCTCCTTGCTCAGCTTGGGTTTGACCCCAAGAACGGGGCAAGACCGGTGAAGCGAATGAT 2316
|||||||||||||||||| |||||||| || |||||||||| |||||||||||| ||||
Sbjct 2830 TCTCCTTGCTCAGCTTGGCTTTGACCCTAACTACGGGGCAAGGCCGGTGAAGCGAGTGAT 2889
Query 2317 TGAGA-AGCTTGTGAAGAAAGAGATCACCT-TCAA-AGTTTTGAAAGGAGATTTTGCAGA 2373
| | | || | ||| |||| |||||| | | || | ||||||||||||||||||||||
Sbjct 2890 TCA-ACAGATGGTGGAGAATGAGATCGC-TGTCGGGA-TTTTGAAAGGAGATTTTGCAGA 2946
Query 2374 GGATGACACTATTCTTATCGATGCTGACCA---GCCGA---ACAACAAATTGGTCATCAA 2427
|| || || ||||| |||||| |||||| | | | ||||||||||||| |||||
Sbjct 2947 AGAAGATACCGTTCTTGTCGATGTTGACCACTTGGCTAGTGACAACAAATTGGTTATCAA 3006
Query 2428 GAAGATGGATAATAATGCT 2446
|||| | || | |||||||
Sbjct 3007 GAAGCTTGAGAGTAATGCT 3025
> AT3G32375.1 | Symbols: | pseudogene, putative heat shock protein,
similar to heat shock protein GI:3360502 from (Plectonema
boryanum); blastp match of 80% identity and 2.6e-110 P-value
to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700 ClpB {Phaseolus
lunatus} | chr3:13304501-13306236 FORWARD LENGTH=1736
Length=1736
Score = 640 bits (346), Expect = 0.0
Identities = 577/686 (84%), Gaps = 25/686 (4%)
Strand=Plus/Plus
Query 1325 CTTAAGTATGGAACACTTACGTCCCTCGAACGCCAGTTAGAAGAAGCTGAG-AAGAATCT 1383
|||||||||||||| ||| |||||| || || |||||||||||||| || ||||| ||
Sbjct 27 CTTAAGTATGGAACCCTTGTATCCCTCCAAGGCTAGTTAGAAGAAGCT-AGAAAGAACCT 85
Query 1384 CATGAATTTCCGAGAGTC-TCACCAGTCGCTAGTACGAGAA-GAGTTAA-CAGATCGTGA 1440
|| ||||| || || | | | || || ||||| |||||| || ||| || | | | |
Sbjct 86 CACAAATTTTAGAAAG-CATGAACATTCCCTAGTCCGAGAATAAG-TAACCA-AGCTTAA 142
Query 1441 CATAGCATCA-ATAGTAAGCAAGAAGA-CTGGTATTCCACAATCAAATCTTCAGAAATCA 1498
||||| | | |||||||||||| || || |||||||| ||| ||||||||| |||||
Sbjct 143 CATAG-AGGATATAGTAAGCAAG-TGACCT-ATATTCCACTATCCAATCTTCAGCAATCA 199
Query 1499 GAGAGAGAAAAGCTGGTCATGTTGGATCAAGTGCTCCATGAGAGAATTGTTGGTCAAGAC 1558
|||||||||||| | ||||||||||| ||| | ||||| |||||| | ||| |||||||
Sbjct 200 GAGAGAGAAAAGTTAGTCATGTTGGAACAAATCCTCCACGAGAGAGTAATTGCTCAAGAC 259
Query 1559 ATGGCTGTAGAATTAGTTGCAGATGCTATCCGTTGTTCGAAGGCTGGTCTTTCTGATCCT 1618
| | |||||| | |||||| ||||||||||||||||| ||||||||| |||| ||||||
Sbjct 260 TTAGATGTAGAGTCAGTTGCCGATGCTATCCGTTGTTCAAAGGCTGGTATTTCAGATCCT 319
Query 1619 AACCGACCTATAGCCAGTTTTATGTTCATGGGTCCAACAGGTGTTGGTAAGACCGAACTT 1678
||||| |||||||| ||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 320 AACCGCCCTATAGCTAGTTTTATGTTCATGGGACCAACAAGTGTTGGTAAGACCGAGCTT 379
Query 1679 GCCAAGGCTCTAGCTGGATACCTTTTCAACAATGAAAATGCAATAGTGAGGATTGATATG 1738
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 380 GCCAAGGCACTAGCTGGATACCTTTTCAACAATGAAAACGCAATAGTGAGGATAGATATG 439
Query 1739 AGTGAGTACATGGAAAAA--GTCTCGGTCACACGGCTCATTGGCGCAT--GTCCTGGCTA 1794
| | |||||||||||||| || | | || ||| |||| |||| |||| || ||||||
Sbjct 440 ATTTAGTACATGGAAAAAACGT-TAG-TCTCACAGCTCGTTGGTGCATCAGT--TGGCTA 495
Query 1795 TGTCGGGTAT-AGTGAAGGTGGGCAA-CTAACTGAAGCTGTAAGGAGGAGACCTTATTCA 1852
||| || || | || |||||| || | |||||||| ||| | |||||||||||||||
Sbjct 496 TGTTGGTTACGAA-GACGGTGGGAAATC-AACTGAAGTTGTTCGAAGGAGACCTTATTCA 553
Query 1853 GTGGTTCTGTTTGATGAGATCGAGAAAGCTCACCCTGATGTCTTCAATGTCTTGCTACAA 1912
||||||| ||||||||||||||||||| | |||||| ||||||||| | |||||||||||
Sbjct 554 GTGGTTCAGTTTGATGAGATCGAGAAACCGCACCCTAATGTCTTCAGTATCTTGCTACAA 613
Query 1913 CTACTAGATGATGGAAGAATAACCGATTCTCATGGTAGGACAGTAAGTTTTACAAACTGC 1972
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 614 CTACTAGACGATGGAAGAATAACTGATTCTCATGGTAGGACAGTAAGTTTCACAAACTGC 673
Query 1973 TTTGTCATAATGACGTCTAATATAGG 1998
||||| ||||| ||||||||||||||
Sbjct 674 TTTGTAATAATTACGTCTAATATAGG 699
Score = 274 bits (148), Expect = 3e-72
Identities = 184/201 (92%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 1991 AATATAGGATCTCAACACATAC---TTGAGACTATCCGCAACAATGAAGATAGCAAAGAA 2047
|||||| |||||| ||| |||| |||||||||| |||||||||||||||| |||||||
Sbjct 926 AATATAAGATCTCTACATATACTTATTGAGACTATTCGCAACAATGAAGATATCAAAGAA 985
Query 2048 GAAGTTTATGAAATGATGAAGAAACAAGTTGTGGAGTTAGCAAGAAAAACTTTCAAGCCA 2107
| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 986 GCAGTTTATGAAATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTTAAGCCA 1045
Query 2108 GAGTTCATGAATAGAATTGATGAATACATAGTTTTCCAGCCTTTGGATTCAAGAGAAATA 2167
||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||
Sbjct 1046 AAGTTCATGAATAGAATTGATGAATACATAGTTTCCCAGCCTTTAAATTCAAGCGTAATA 1105
Query 2168 TCCAAAATCGTGGAGTTACAG 2188
|||||||||||||||||||||
Sbjct 1106 TCCAAAATCGTGGAGTTACAG 1126
Score = 111 bits (60), Expect = 3e-23
Identities = 66/69 (96%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 2336 GAGATCACCTTCAAAGTTTTGAAAGGAGATTTTGCAGAGGATGACACTATTCTTATCGAT 2395
||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1457 GAGATCACCCTCAACGTTTTGAAAGGAGATTTTGCAGAGAATGACACTATTCTTATCGAT 1516
Query 2396 GCTGACCAG 2404
|||||||||
Sbjct 1517 GCTGACCAG 1525
Score = 104 bits (56), Expect = 4e-21
Identities = 62/65 (95%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 2420 GTCATCAAGAAGATGGATAATAATGCTCATGTCAAACAAAATTAGACGATTTGGTTTTGT 2479
||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1665 GTCATCAAGAAGATGGAGAATAATGCTCATGTCAAACAAAATTAGAAGATTCGGTTTTGT 1724
Query 2480 TCTAT 2484
|||||
Sbjct 1725 TCTAT 1729
> AT2G25030.1 | Symbols: | pseudogene, HSP100/ClpB, putative,
similar to HSP100/ClpB GI:9651530 (Phaseolus lunatus); blastp
match of 77% identity and 3.4e-113 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700
ClpB {Phaseolus lunatus} |
chr2:10648663-10650450 FORWARD LENGTH=1788
Length=1788
Score = 579 bits (313), Expect = 6e-164
Identities = 475/553 (86%), Gaps = 11/553 (2%)
Strand=Plus/Plus
Query 1451 ATAGTAAGCAAGAAGA-CTGGTATTCCACAATCAAATCTTCAGAAATCAGAGAGAGAAAA 1509
|||||||||||| || || |||||||| || ||||||||| ||||||||||||||||
Sbjct 21 ATAGTAAGCAAG-TGACCT-ATATTCCACTGTCCAATCTTCAGCAATCAGAGAGAGAAAA 78
Query 1510 GCTGGTCATGTTGGATCAAGTGCTCCATGAGAGAATTGTTGGTCAAGACATGGCTGTAGA 1569
||| ||||||||||| ||| | ||||| |||||||| ||| ||||||| ||| ||||||
Sbjct 79 GCTAGTCATGTTGGAACAAATACTCCACGAGAGAATAATTGCTCAAGACTTGGATGTAGA 138
Query 1570 ATTAGTTGCAGATGCTATCCGTTGTTCGAAGGCTGGTCTTTCTGATCCTAACCGACC-TA 1628
| |||||| ||||||||||||||||| ||||||||| |||| ||||||||||| || ||
Sbjct 139 GTCAGTTGCCGATGCTATCCGTTGTTCAAAGGCTGGTATTTCAGATCCTAACCG-CCTTA 197
Query 1629 TAGCCAGTTTTATGTTCATGGGTCCAA-CAGGTGTTGGTAAGACCGAACTTGCCAAGGCT 1687
|||| ||||||||||||||||| ||| || |||||||||||||||| |||||||||||
Sbjct 198 TAGCTAGTTTTATGTTCATGGG-ACAACCAAGTGTTGGTAAGACCGAGCTTGCCAAGGCA 256
Query 1688 CTAGCTGGATACCTTTTCAACAATGAAAATGCAATAGTGAGGATTGATATGAGTGAGTAC 1747
||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || ||
Sbjct 257 CTAGCTGGATACCTTTTCAACAATGAAAACACAATAGTGAGGATAGATATGAGTTAGCAC 316
Query 1748 ATGGAAAAA--GTCTCGGTCACACGGCTCATTGGCGCATGTCCTGGCTATGTCGGGTATA 1805
||||||||| || | | || ||| |||| |||| |||| ||||||||||| || ||
Sbjct 317 ATGGAAAAAACGT-TAG-TCTCACAGCTCGTTGGTGCATCACCTGGCTATGTTGGTTACG 374
Query 1806 GTGAAGGTGGGCAACTAACTGAAGCTGTAAGGAGGAGACCTTATTCAGTGGTTCTGTTTG 1865
| || |||||| || ||||||||| ||| | |||||||||||||||||||||| |||||
Sbjct 375 GAGACGGTGGGAAATTAACTGAAGTTGTTCGAAGGAGACCTTATTCAGTGGTTCAGTTTG 434
Query 1866 ATGAGATCGAGAAAGCTCACCCTGATGTCTTCAATGTCTTGCTACAACTACTAGATGATG 1925
|||||||||||||| | |||| ||||||||||| | ||||||| ||||||||||| ||||
Sbjct 435 ATGAGATCGAGAAACCGCACCTTGATGTCTTCAGTATCTTGCTTCAACTACTAGACGATG 494
Query 1926 GAAGAATAACCGATTCTCATGGTAGGACAGTAAGTTTTACAAACTGCTTTGTCATAATGA 1985
|||||||||| ||||||||||||||||| ||||||| |||||||| ||||| ||||| |
Sbjct 495 GAAGAATAACTAATTCTCATGGTAGGACACTAAGTTTCACAAACTGTTTTGTAATAATTA 554
Query 1986 CGTCTAATATAGG 1998
| |||||||||||
Sbjct 555 CATCTAATATAGG 567
Score = 453 bits (245), Expect = 4e-126
Identities = 281/299 (94%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 2186 CAGATGAGACAATTAAAGAAGAGGTTGGAACAGAATAAAATAAATCTTGAATGCACGAAA 2245
|||||||||||| | ||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1262 CAGATGAGACAAGTGAAGAAGAGGTTGGAACAGAATAAAATAAATCTTGAGTACACAAAA 1321
Query 2246 GAAGCGGTGGATCTCCTTGCTCAGCTTGGGTTTGACCCCAAGAACGGGGCAAGACCGGTG 2305
||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1322 GAAGCTGTGGATCTCCTTGCTCAGCTTGGCTTTGACCCCAACAATGGGGCAAGACCGGTG 1381
Query 2306 AAGCGAATGATTGAGAAGCTTGTGAAGAAAGAGATCACCTTCAAAGTTTTGAAAGGAGAT 2365
|||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1382 AAGCAAATGATTGAGAAGCTTGTGAAGAAGGAGATCACCCTCAAAGTTTTGAAAGGAGAT 1441
Query 2366 TTTGCAGAGGATGACACTATTCTTATCGATGCTGACCAGCCGAACAACAAATTGGTCATC 2425
||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1442 TTTGCAGAGGATGGCACTATTCTTATCGATGCTGACCAGCCTAACAACAAACTGGTCATC 1501
Query 2426 AAGAAGATGGATAATAATGCTCATGTCAAACAAAATTAGACGATTTGGTTTTGTTCTAT 2484
||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1502 AAGAAGATGGAGAATAATGCTCATGTCAAAGAAAATTAGAAGATTTGGTTTTGTTCTAT 1560
Score = 283 bits (153), Expect = 5e-75
Identities = 184/199 (92%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 1991 AATATAGGATCTCAACACATACTTGAGACTATCCGCAACAATGAAGATAGCAAAGAAGAA 2050
||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||| |
Sbjct 798 AATATAGGATCTCTACATATACTTGAGACTATTCGCAACAATGAAGATATCAAAGAAGCA 857
Query 2051 GTTTATGAAATGATGAAGAAACAAGTTGTGGAGTTAGCAAGAAAAACTTTCAAGCCAGAG 2110
||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||
Sbjct 858 TTTTATGAAATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTTAGGCCAAAG 917
Query 2111 TTCATGAATAGAATTGATGAATACATAGTTT-TCCAGCCTTTGGATTCAAGAGAAATATC 2169
||||||||||||||||||||||||||||||| || ||||||| ||||||| ||||||||
Sbjct 918 TTCATGAATAGAATTGATGAATACATAGTTTCTC-AGCCTTTAAATTCAAGCGAAATATC 976
Query 2170 CAAAATCGTGGAGTTACAG 2188
|||||||||||||||||||
Sbjct 977 CAAAATCGTGGAGTTACAG 995
> AT3G32387.1 | Symbols: | pseudogene, putative clpB heat shock
protein, blastp match of 63% identity and 5.8e-148 P-value
to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700 ClpB {Phaseolus
lunatus} | chr3:13323220-13325196 FORWARD LENGTH=1977
Length=1977
Score = 241 bits (130), Expect = 3e-62
Identities = 224/269 (83%), Gaps = 8/269 (3%)
Strand=Plus/Plus
Query 991 AGCTATTGATCTTGTTGATGAAGCTGCTGCAAAGCTGAAGATAGAGATCACTACTAAACC 1050
|||||||||||||||||||||||||||||||||| ||| | | | | | || |||||
Sbjct 173 AGCTATTGATCTTGTTGATGAAGCTGCTGCAAAGTTGA-G---G-GTTT-CGACCAAACC 226
Query 1051 AACAGAAATCGATGAAATAGACAGAGATGTGACCACACTAGAGATGGAAAAGCTTTCTTT 1110
||| ||| | ||||||||| ||| || ||||| || ||| |||||||| ||| |||||||
Sbjct 227 AACTGAACTTGATGAAATAAACAAAGTTGTGATCAAACTGGAGATGGAGAAGTTTTCTTT 286
Query 1111 GAAAAAGGATAGTGATAAAGCTTCTAAAGAACGGCTAAAGAAGATTGAGAATGATTTGAC 1170
| ||| ||||| |||||||||||||||||||| ||| |||| || || || ||||||||
Sbjct 287 GCAAAGGGATACTGATAAAGCTTCTAAAGAACTTCTACAGAAAATGGATAAAGATTTGAC 346
Query 1171 CACACTCAAGGATAAACA-AAAGAAATTTAGTAAGCTATTGGAAGAAGAAAAGTTTCTAA 1229
|| ||||||||||| || |||||| || |||| || |||||| |||||||||| ||| |
Sbjct 347 CATGCTCAAGGATAAGCAGAAAGAACTT-AGTATGCAATTGGAGGAAGAAAAGTCTCTCA 405
Query 1230 TTACTAAAATACGTTCATTTAAAGAAGAG 1258
||| |||| ||||||||||||||||||||
Sbjct 406 TTAATAAATTACGTTCATTTAAAGAAGAG 434
Score = 206 bits (111), Expect = 1e-51
Identities = 207/252 (82%), Gaps = 12/252 (5%)
Strand=Plus/Plus
Query 2186 CAGATGAGACAATTAAAGAAGAGGTTGGAACAGAATAAAATAA-ATCTTGAATGCACGA- 2243
||||||| || | | ||||| ||||||||| || ||||||| | ||||| | ||| |
Sbjct 1665 CAGATGAAACGAGTGAAGAATTTGTTGGAACAAAAGAAAATAACA-CTTGAGTACAC-AC 1722
Query 2244 AAGAAGCGGTGGATCTCCTTGCTCAGCTTGGGTTTGACCCCAAGAACGGGGCAAGACCGG 2303
||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
Sbjct 1723 AAGAAGCGGTGGATCTCCTTGCTCAGCTTGGGTTTGACCCCAACAATGGGGCAAGGCCAG 1782
Query 2304 TGA-AGCGAATGATTGAG-AAGCTTGTGAAGAAAGAGATCACCTTCAAAGTT-TTGAAAG 2360
||| | || ||||| || ||| | |||||||| |||||| || |||| ||||| |
Sbjct 1783 TGAGAA-GAGTGATTCAGGAAG-TAGTGAAGAAGGAGATCTCCA-CAAAAAAATTGAAGG 1839
Query 2361 GAGAT-TTTGCAGAGGATGACACTATTCTTATCGATGCTGACCAGCCGAACAACAAATTG 2419
|||| ||| ||||||| |||||||| ||| |||||| |||||| || ||||||||||||
Sbjct 1840 GAGAAATTT-CAGAGGAAGACACTATACTTCTCGATGTTGACCAACCTAACAACAAATTG 1898
Query 2420 GTCATCAAGAAG 2431
||||||||||||
Sbjct 1899 GTCATCAAGAAG 1910
Score = 122 bits (66), Expect = 1e-26
Identities = 88/98 (90%), Gaps = 4/98 (4%)
Strand=Plus/Plus
Query 897 AGTTACACCATGGTGTTAAGATATCAGATGGTTCCCTT-GTTTCAGCAGCGGTTTTGGCA 955
||||||| |||||||||||||||||| |||||| | || ||||||||||||||||||||
Sbjct 5 AGTTACATCATGGTGTTAAGATATCAAATGGTT-CTTTATTTTCAGCAGCGGTTTTGGCA 63
Query 956 GACCGCTACATCACTGAACGTTTT-TTGCCAGATAAAG 992
|||||||||||||||||||| ||| || ||||| ||||
Sbjct 64 GACCGCTACATCACTGAACGCTTTCTT-CCAGACAAAG 100
> AT3G31906.1 | Symbols: | pseudogene, ATP-dependent CLPB protein,
blastp match of 74% identity and 9.9e-102 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700
ClpB {Phaseolus lunatus}
| chr3:12896942-12898508 FORWARD LENGTH=1567
Length=1567
Score = 211 bits (114), Expect = 2e-53
Identities = 144/158 (91%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 1991 AATATAGGATCTCAACACATAC---TTGAGACTATCCGCAACAATGAAGATAGCAAAGAA 2047
|||||| |||||| ||| |||| |||||||||| |||||||||||||||| |||||||
Sbjct 916 AATATAAGATCTCTACATATACTTATTGAGACTATTCGCAACAATGAAGATATCAAAGAA 975
Query 2048 GAAGTTTATGAAATGATGAAGAAACAAGTTGTGGAGTTAGCAAGAAAAACTTTCAAGCCA 2107
| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 976 GTAGTTTATGAAATGATGAAGCAACAAGTTGTGGAGTTAGCAAGAAAAACTTTTAGGCCA 1035
Query 2108 GAGTTCATGAATAGAATTGATGAATACATAGTTTTCCA 2145
||||||||||||||||||||||||||||||||| |||
Sbjct 1036 AAGTTCATGAATAGAATTGATGAATACATAGTTTCCCA 1073
Score = 156 bits (84), Expect = 1e-36
Identities = 99/106 (93%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 2336 GAGATCACCTTCAA-AGTTTTGAAAGGAGATTTTGCAGAGGATGACACTATTCTTATCGA 2394
||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 GAGATCACCCTCAACA-TTTTGAAAGGAGATTTTGCAGAGGATGACACTATTCTTATCGA 1521
Query 2395 TGCTGACCAGCCGAACAACAAATTGGTCATCAAGAAGATGGATAAT 2440
|||||||||||| || |||||| ||||||||||||||||||| |||
Sbjct 1522 TGCTGACCAGCCTAAAAACAAACTGGTCATCAAGAAGATGGAGAAT 1567
Score = 106 bits (57), Expect = 1e-21
Identities = 70/76 (92%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 2114 ATGAATAGAATTGATGAATACATAGTTTTCCAGCCTTTGGATTCAAG-AGAAATATCCAA 2172
|||||||||||||||||||||||||||| ||| ||||| ||||||| | ||||||||||
Sbjct 1074 ATGAATAGAATTGATGAATACATAGTTTCCCAACCTTTAAATTCAAGCA-AAATATCCAA 1132
Query 2173 AATCGTGGAGTTACAG 2188
||||||||||||||||
Sbjct 1133 AATCGTGGAGTTACAG 1148
> AT3G32383.1 | Symbols: | transposable element gene | chr3:13314146-13318012
FORWARD LENGTH=3867
Length=3867
Score = 195 bits (105), Expect = 2e-48
Identities = 159/185 (86%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 312 ATGAAGCACTTGCAAA-GTATGGAAATGATTTAACTGAGATCGCTAGACAAGGAAAACTA 370
|||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||||||
Sbjct 808 ATGAAGCACTTG-AAACATATGGAAGGGATTTAACCGAGATGGCTAGACAAGGAAAACTC 866
Query 371 CGTCCTGTGATCAGACG-GAATGATGAAATTCGGAGTTGCATCCAAATACTATGCAGGAT 429
| |||| | || |||| | |||||||| || |||||||||||||||||||||||||
Sbjct 867 CCTCCTCTCATTGGACGTG-ATGATGAAGTTAACCGTTGCATCCAAATACTATGCAGGAT 925
Query 430 GACAAAAAGCAATCCTATTATCGTTGGTGAACCAGGTGTAGGAAAAACTGCTATTGCAGA 489
|||||||||||||||| ||||| |||||||||| ||||| || ||||||||||||| |||
Sbjct 926 GACAAAAAGCAATCCTGTTATCATTGGTGAACCGGGTGTTGGGAAAACTGCTATTGTAGA 985
Query 490 AGGGT 494
|||||
Sbjct 986 AGGGT 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123260178951
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5