BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932624
Length=2483
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25140.1 | Symbols: HSP98.7, CLPB-M, CLPB4 | casein lytic pr... 1855 0.0
AT3G32387.1 | Symbols: | pseudogene, putative clpB heat shock ... 1155 0.0
AT3G32383.1 | Symbols: | transposable element gene | chr3:1331... 366 5e-100
AT2G25030.1 | Symbols: | pseudogene, HSP100/ClpB, putative, si... 283 5e-75
AT2G25040.1 | Symbols: | pseudogene, similar to ClpB, blastp m... 274 3e-72
> AT2G25140.1 | Symbols: HSP98.7, CLPB-M, CLPB4 | casein lytic
proteinase B4 | chr2:10697703-10702152 REVERSE LENGTH=3223
Length=3223
Score = 1855 bits (1004), Expect = 0.0
Identities = 1831/2219 (83%), Gaps = 102/2219 (5%)
Strand=Plus/Plus
Query 312 AATGATAAAGCACTTGAAAAATATGGAAGTGATTTAACGGAGATGGCTAAACAAGGAAAA 371
||| || ||||||||||||| ||||||| ||||||||| |||||||||| || ||| ||
Sbjct 867 AAT-ATCAAGCACTTGAAAAGTATGGAAATGATTTAACTGAGATGGCTAGACGAGGGAAG 925
Query 372 CTCCCA-CCTCTCATTGGACGTGATGATGAAGTTAACCGGTGTATCCAAATACTATGCAG 430
|| | ||| ||||||| || ||||||||| ||| || || ||||| ||| |||| ||
Sbjct 926 CT-GGATCCTGTCATTGGGCGGGATGATGAAATTAGGCGTTGCATCCAGATATTATGTAG 984
Query 431 GATG-ACAAAAAGCAACCCTGTTATCATCGGTGAACCGGGTGTAGGGAAAACCGCTATTG 489
|| | ||||||| ||| || ||||| || |||||||| |||||||||||||| || ||||
Sbjct 985 GA-GAACAAAAAACAATCCGGTTATTATTGGTGAACCTGGTGTAGGGAAAACTGCAATTG 1043
Query 490 CAGAAGGGTTGGCCCAGA-GAATTGTAAAAGGGGATGTCCCTGAACCTCTCTTGAACCAG 548
|||| |||||||| || | ||||||| ||| |||||||||||||||||| |||| | |
Sbjct 1044 CAGAGGGGTTGGCTCA-ACGAATTGTGCGAGGAGATGTCCCTGAACCTCTCATGAATC-G 1101
Query 549 AAGGTT-ATATCTCTCGACATAGGTGCACTGATTGCTGGTACCGAATATCGAGG-GCAAT 606
|| ||| |||||||||||||| ||| |||| |||||||| || ||| |||||| | | |
Sbjct 1102 AAAGTTGATATCTCTCGACATGGGTTCACTTCTTGCTGGTGCCAAATTTCGAGGAG-ATT 1160
Query 607 TTGAGGAAAGGTTGAAAGCAATGTTGAATGAAATAACTGCATCCAAT-GGCAAGACAATA 665
||||||| |||||||||||| | |||| ||| || |||| |||||| ||||| |||||
Sbjct 1161 TTGAGGAGAGGTTGAAAGCAGTAATGAAGGAAGTATCTGCTTCCAATGGGCAA-ACAATC 1219
Query 666 TTGTTCATTGATGAAATCCACACTATTGTTGGTGCAGGAGCTTGTAAAGAT-GATACAAT 724
||||| |||||||| ||||||||| |||||||||||||||| || ||| || ||||
Sbjct 1220 TTGTTTATTGATGAGATCCACACTGTTGTTGGTGCAGGAGC---TATGGATGGA-GCAAT 1275
Query 725 GGATGTGAGCAACCTCCTAAAACCAATGCTTGGAAGAGGTGAACT-ACGATGCATTGGTG 783
||||| ||||||||| | ||||||||||||||| |||||||||| | ||||||||||||
Sbjct 1276 GGATGCAAGCAACCTCTTGAAACCAATGCTTGGACGAGGTGAACTGA-GATGCATTGGTG 1334
Query 784 CAACTACGCTAACCGAATACCGCAAATATATGGAGAAAGATCCAGCTCTTGAACGTAGGT 843
||||||| || |||||||||||||||||||| |||||||| |||||||| || |||||||
Sbjct 1335 CAACTACACTGACCGAATACCGCAAATATATAGAGAAAGACCCAGCTCTAGAGCGTAGGT 1394
Query 844 TTCAGA-AAGTGTTCTGTAATCAGCCATCTGTTGAAGATACCATCTCGATTCTTCGTGGG 902
|||| | ||||||| ||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 1395 TTCA-ACAAGTGTTATGTGTTCAGCCCTCTGTTGAAGATACAATCTCGATTCTTCGTGGG 1453
Query 903 TTAAGAAAGCGGTATGAATTACATCATGGTGTTAAGATATCAGATGGTTCTCTAGTTTCA 962
|||||| ||||||| || ||||| ||||| |||| ||||||||| || | || ||||||
Sbjct 1454 TTAAGAGAGCGGTACGAGTTACACCATGGCGTTACTATATCAGATAGTGCCCTTGTTTCA 1513
Query 963 GCAGCGGTT-TTGGCAGACCGCTACATCACTGAACGCTTTCTTCCAGACAAAGCTATTGA 1021
||||| ||| || ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1514 GCAGCAGTTCTT-GCAGACCGCTACATCACCGAACGCTTTCTGCCAGACAAAGCTATTGA 1572
Query 1022 TCTTGTTGATGAAGCTGCTGCAAAGTTGAGGGTTTTA-ACCACTCCGAAACCAACTGAAC 1080
||||||||| ||||||| ||||||| ||| | | | | |||| | |||||||||||||
Sbjct 1573 TCTTGTTGACGAAGCTGGTGCAAAGCTGA-AGATGGAGATCACTTCTAAACCAACTGAAC 1631
Query 1081 TGGATGAAATAAACAAAGCTGTGCTCAAACTCGCGACAGAGAAGTTTTCT-TTGCAAAGG 1139
| |||| |||| | | ||||||| ||||| | | || || ||| ||||| || |||
Sbjct 1632 TAGATGGAATAGATAGAGCTGTGATCAAATTGGAGATGGAAAAGCTTTCTCTT-AAAAAT 1690
Query 1140 GATACTGAAAAAGCTTCTATAGAA-GTTCTACAGAA-AATGAATAAAGATTTGAGCAGGC 1197
|||||||| ||||| |||| |||| | |||||||| | || | || ||| || || ||
Sbjct 1691 GATACTGATAAAGCATCTAAAGAACG-GCTACAGAAGATTG-AGAATGATCTGTCCACGC 1748
Query 1198 TCGCGGATAAAC-GAAACAAACTCAGTAAGCAATTGGAGCAAGAAAAGTCTCTCATTACT 1256
|| | |||| |||| |||||| | |||| |||| |||||||||| ||||| ||
Sbjct 1749 TCAAACAGAAACAGAAA-GAACTCAATGTCCAATGGGAGAAAGAAAAGTCGCTCATGACA 1807
Query 1257 AAATTACGTTCATTTAAAG-A-AGA--GATCGA-TAAATC-CG--A-GGAA-CT--TGAA 1304
||| ||||||| ||||| | | ||| |||||| | || | || | ||| || ||||
Sbjct 1808 AAAATACGTTCGTTTAAGGAAGAGATTGATCGAGTTAACCTCGAAATTGAATCTGCTGAA 1867
Query 1305 --TG----TGGTCTAAACGGTA-CTGATGATCTTAAGTATGGAACAATTATT-TCTCTCC 1356
|| || ||||||| | | ||| ||| || |||||||||||| || || || ||||
Sbjct 1868 CGTGAATATGATCTAAACCG-AGCTGCTGAGCTGAAGTATGGAACACTT-TTGTCCCTCC 1925
Query 1357 AACGCCAGTTAGAAGAAGCGGAGAA-ATATTTCACCAA-TCCCGA-A-----G--A-T-T 1404
||||||| ||||||||||| ||||| | || |||| || | |||| | | | |
Sbjct 1926 AACGCCAATTAGAAGAAGCTGAGAAGA-ATCTCACGAATTTCCGACAGTTTGGACAGTCA 1984
Query 1405 C-ACTCCAAGGAGAGGTAACCGATGTCCACATAGCGGAGATAGTAAGCAAGTGGACCGGT 1463
| ||||| || || ||| |||||| | ||||||| || ||||||||||||||||| |||
Sbjct 1985 CTACTCCGAGAAGTGGTTACCGATCTTGACATAGCAGAAATAGTAAGCAAGTGGACTGGT 2044
Query 1464 ATTCCACTATCAAATCTTCGGCAATCAGAGAAAGAAAAGCTAGTCATGTTGGAAGAAGTG 1523
||||||||||| ||||||| ||||||||||| ||| ||| |||| |||||||||||||||
Sbjct 2045 ATTCCACTATCTAATCTTCAGCAATCAGAGAGAGAGAAGTTAGTGATGTTGGAAGAAGTG 2104
Query 1524 CTTCACAAGAGAGTTGTTGGTCAAGAAAAGGCTGTAGAATCAATAGCAAATGCTATCCGT 1583
|| ||| | |||||| |||||||||| | ||||||| ||||| ||||| ||||||||||
Sbjct 2105 CTCCACCATAGAGTTATTGGTCAAGACATGGCTGTAAAATCAGTAGCAGATGCTATCCGA 2164
Query 1584 TGTTCAAAGGCTGGCCTATCAGATCCTAACCGTCCAATAGCCAGTTTTATGTTCATGGGT 1643
|||||| |||||| || || ||||||||||| |||||||| ||||| ||||||||||||
Sbjct 2165 CGTTCAAGGGCTGGTCTTTCTGATCCTAACCGCCCAATAGCTAGTTTCATGTTCATGGGT 2224
Query 1644 CCAACAGGTGTTGGTAAAACCGAGCTTGCCAACACTCTTGCTGGATACCTTTTCAACACT 1703
||||||||||||||||| |||||||||||||| |||| || ||||||||||| ||||||
Sbjct 2225 CCAACAGGTGTTGGTAAGACCGAGCTTGCCAAGGCTCTAGCGGGATACCTTTTTAACACT 2284
Query 1704 GAAAACGCGATAGTGAGGATCGATATGAGTGAGTACATGGaaaaaaaCTCAGTCTCACGA 1763
||||| || ||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2285 GAAAATGCAATAGTGAGGGTCGATATGAGTGAGTACATGGAAAAACACTCAGTCTCACGG 2344
Query 1764 CTCGTTGGTGCACCTCCTGG-T-TGTGCTGGTTTTGAAGAAGGTGGGCAGTTAACTGAAG 1821
|| ||||||||||| ||||| | ||| | |||| ||||||||||||||||||||||||||
Sbjct 2345 CTTGTTGGTGCACCACCTGGCTATGT-C-GGTTATGAAGAAGGTGGGCAGTTAACTGAAG 2402
Query 1822 TTGTTCGGAGGAGACCTTACTCGGTGGTTCTGTTTGATGAGATCGAGAAAGCACACCCGG 1881
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2403 TTGTTCGCAGGAGACCTTACTCGGTGGTTCTGTTTGATGAGATCGAGAAAGCCCACCCTG 2462
Query 1882 ATGT-TTTCAATATCTTTCTACAGA-TACTAGATGATGGAAGAGTAACTGATTCTCAAGG 1939
|||| ||| |||||||| ||||| | | ||||| ||||||||| ||||||||||||||||
Sbjct 2463 ATGTCTTT-AATATCTTGCTACA-ACTGCTAGACGATGGAAGAATAACTGATTCTCAAGG 2520
Query 1940 AAGGACTGTAAGTTTTAGAAACTGCT-TTGTAGTAATGACGTCGAATATAGGATCACAAC 1998
|||||| |||||||| | |||||| | ||||| | |||||||||||||||||||| || |
Sbjct 2521 AAGGACCGTAAGTTTCAAAAACTG-TGTTGTAATTATGACGTCGAATATAGGATCTCA-C 2578
Query 1999 C-CATACTTGAGACTTTCCGCAACAATAAAGATAGCAAAGAAGCTGTTTATGGGATGATG 2057
| |||||||||||| ||||||||||| |||| ||||||||||| ||||||| ||| |||
Sbjct 2579 CACATACTTGAGACCCTCCGCAACAATGAAGACAGCAAAGAAGCAGTTTATGAGATAATG 2638
Query 2058 AAGCAACAAGCTGTGGAGTTAGCAAGACAGACTTTTAAGCCAGAGTTCATGAATAGAATT 2117
|||| |||| |||||||||||||||||| | ||| | ||| ||||||||||| ||||||
Sbjct 2639 AAGCGGCAAGTTGTGGAGTTAGCAAGACAAAATTTCAGGCCTGAGTTCATGAACAGAATT 2698
Query 2118 GACGAATACATAGTTTTCCAGCCGTTGGATT-TAACAGAATTATCCAAAATCGTGGAGTT 2176
||||| |||||||||||||||||| |||||| |||| ||| | ||||||||||| |||||
Sbjct 2699 GACGAGTACATAGTTTTCCAGCCGCTGGATTCTAAC-GAAATCTCCAAAATCGTAGAGTT 2757
Query 2177 TCAGATGAGACGAGTGAAGAATTTG-TTGGAACAAAAGAAAAT-AAATCTTGAGTACACA 2234
||||||||||| ||||||||| | |||||||| |||||||| ||| ||| |||| ||
Sbjct 2758 ACAGATGAGACGGGTGAAGAATA-GCTTGGAACAGAAGAAAATCAAA-CTTCAGTATACC 2815
Query 2235 AAAGAAGCGGTGGATCTACTTGCTCAGCTTGGGTTTGATCCC-AACAATGGGGCAAGGCC 2293
||||| || |||||||| |||||||||||||| ||||| ||| ||| | |||||||||||
Sbjct 2816 AAAGAGGCAGTGGATCTCCTTGCTCAGCTTGGCTTTGA-CCCTAACTACGGGGCAAGGCC 2874
Query 2294 AGTGAAGAGAGTGATTCAGGAGATAGTGAAGAAGGAGATCTCC-TCAAAACTTTTGAAGG 2352
|||||| |||||||||| |||| ||| |||| |||||| | || | ||||||| |
Sbjct 2875 GGTGAAGCGAGTGATTCAACAGATGGTGGAGAATGAGATCGCTGTCGGGA-TTTTGAAAG 2933
Query 2353 GAGAAATTT-CAGAGGAAGACACTATACTTCTCGATGTTGACCAAC----CTA---ACAA 2404
|||| ||| |||| ||||| || | ||| ||||||||||||| | ||| ||||
Sbjct 2934 GAGAT-TTTGCAGAAGAAGATACCGTTCTTGTCGATGTTGACCA-CTTGGCTAGTGACAA 2991
Query 2405 CAAATTGGTCATCAAGAAGCTAGAGATTAATGCTCCTGTTGAAGAATTGGCCCCATAAT 2463
||||||||| ||||||||||| |||| ||||||| | | ||||||| ||||| | ||||
Sbjct 2992 CAAATTGGTTATCAAGAAGCTTGAGAGTAATGCTTCAGCTGAAGAAATGGCCGCTTAAT 3050
> AT3G32387.1 | Symbols: | pseudogene, putative clpB heat shock
protein, blastp match of 63% identity and 5.8e-148 P-value
to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700 ClpB {Phaseolus
lunatus} | chr3:13323220-13325196 FORWARD LENGTH=1977
Length=1977
Score = 1155 bits (625), Expect = 0.0
Identities = 826/919 (90%), Gaps = 30/919 (3%)
Strand=Plus/Plus
Query 1279 AGATCGATAAATCCGAGGAACTTGAATGTGGTCTAA-ACGGTACTGATGATCTTAAGTAT 1337
|||| |||||||||| |||| |||||||||||||| | ||||||| |||||| ||||||
Sbjct 515 AGATTGATAAATCCGCTGAACGTGAATGTGGTCTAAGA-GGTACTGCTGATCTAAAGTAT 573
Query 1338 GGAACAATTATTTCTCTCCAACGCCAGTTAGAAGAAGCGGAGAA-ATATTTCACCAATCC 1396
|||||| |||| ||||||||||||||||||||| ||| |||||| | || |||||| |||
Sbjct 574 GGAACACTTATGTCTCTCCAACGCCAGTTAGAACAAGTGGAGAAGA-ATCTCACCAGTCC 632
Query 1397 CG-A-A----GAT---TC---ACTCCAAGGAGAGGTAACCGATGTCCACATAGCGGAGAT 1444
|| | | ||| || |||||||| |||||||| |||||||||||||| |||||
Sbjct 633 CGAAGATTCTGATGACTCAATACTCCAAGAAGAGGTAAGTGATGTCCACATAGCAGAGAT 692
Query 1445 AGTAAGCAAGTGGACCGGTATTCCACTATCAAATCTTCGGCAATCAGAGAAAGAAAAGCT 1504
||||||||||||||| |||||||| ||||||||||||| |||||| || || ||||||
Sbjct 693 AGTAAGCAAGTGGACTGGTATTCCTCTATCAAATCTTCAGCAATC--AG--AG-AAAGCT 747
Query 1505 AGTCATGTTGGAAGAAGTGCTTCACAAGAGAGTTGTTGGTCAAGAAAAGGCTGTAGAATC 1564
||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 748 AGTCATGTTGGAAGACGTGCTACACAAGATAGTTGTTGGTCAAGAAAAGGCTGTAGAATC 807
Query 1565 AATAGCAAATGCTATCCGTTGTTCAAAGGCTGGCCTATCAGATCCTAACCGTCCAATAGC 1624
||||||||||| ||| ||||| ||||||||||| || |||||||||| |||||||||
Sbjct 808 AATAGCAAATGTTATACGTTGCTCAAAGGCTGGTCTTTCAGATCCTA----TCCAATAGC 863
Query 1625 CAGTTTTATGTTCATGGGTCCAACAGGTGTTGGTAAAACCGAGCTTGCCAACACTCTTGC 1684
|||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 864 TAGTTTTCTGTTCATGGGTCCAACAGGTGTTGGGAAAACCGAGCTTGCCAACGCTCTTGC 923
Query 1685 TGGATACCTTTTCAACACTGAAAACGCGATAGTGAGGATCGATATGAGTGAGTACATGGa 1744
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 924 TGGATACCTTTTCAACACTGAAAATGCTATAGTGAGGATCGATATGAGTGAGTACATGGA 983
Query 1745 aaaaaaCTCAGTCTCACGACTCGTTGGTGCACCTCCTGGTTGTGCTGGTTTTGAAGAAGG 1804
|||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 984 GAAAAACTCTGTCTCACGACTCGTTGGTGCACCTCCTGGCTGTGCCGGTTTCGAAGAAGG 1043
Query 1805 TGGGCAGTTAACTGAAGTTGTTCGGAGGAGACCTTACTCGGTGGTTCTGTTTGATGAGAT 1864
|||||||||||| |||| |||||| || ||||||||||| |||||||| || || |||||
Sbjct 1044 TGGGCAGTTAACCGAAGCTGTTCGAAGAAGACCTTACTCAGTGGTTCTATTCGACGAGAT 1103
Query 1865 CGAGAAAGCACACCCGGATGTTTTCAATATCTTT-CTACAGATACTAGATGATGGAAGAG 1923
|||||||| ||||| ||||| |||||||| ||| ||||||||||||| |||||||||||
Sbjct 1104 TGAGAAAGCGCACCCTGATGTCTTCAATATTTTTTCTACAGATACTAGGTGATGGAAGAG 1163
Query 1924 TAACTGATTCTCAAGGAAGGACT-GTAAGTTTTAGAAACTGCTTTGTAGTAATGACGTCG 1982
|||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1164 TAACTGATTCGCAAGGAAGGA-TAGTAAGTTTTAGAAACTGCTTTGTAGTAATGACGTCT 1222
Query 1983 AATATAGGATCACAACCCATACTTGAGACTTTCCGCAACAATAAAGATAGCAAAGAAGCT 2042
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1223 AATATAGGATCGCAACCTATACTTGAGACTTTCCGCAACAATAAAGAAAGCAAAGAAGCA 1282
Query 2043 GTTTATGGGATGATGAA-GCAACAAGCTGTGGAGTTAGCAAGACAGACTTTTAAGCCAGA 2101
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1283 GTTTATGGGATGATGAATG-AACAAGCTGTGGAGTTAGCAAGACAAACTTTTAAGCCAGA 1341
Query 2102 GTTCATGAATAGAATTGACGAATACATAGTTTTCCAGCCGTTGGATTTAACAGAATTATC 2161
||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct 1342 GTTCATGAACAGAATTGACGAGTACATAGTTTTCCAGCTGTTGGATTTATCAGAATTATC 1401
Query 2162 CAAAATCGTGGAGTTTCAG 2180
|||||||||||||||||||
Sbjct 1402 CAAAATCGTGGAGTTTCAG 1420
Score = 440 bits (238), Expect = 3e-122
Identities = 286/308 (93%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 2178 CAGATGAGACGAGTGAAGAATTTGTTGGAACAAAAGAAAATAA-ATCTTGAGTACACAAA 2236
||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 1665 CAGATGAAACGAGTGAAGAATTTGTTGGAACAAAAGAAAATAACA-CTTGAGTACACACA 1723
Query 2237 AGAAGCGGTGGATCTACTTGCTCAGCTTGGGTTTGATCCCAACAATGGGGCAAGGCCAGT 2296
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1724 AGAAGCGGTGGATCTCCTTGCTCAGCTTGGGTTTGACCCCAACAATGGGGCAAGGCCAGT 1783
Query 2297 GAAG-AGAGTGATTCAGG-AGATAGTGAAGAAGGAGATCTCCTCAAAACTTTTGAAGGGA 2354
| || ||||||||||||| || |||||||||||||||||||| ||||| |||||||||
Sbjct 1784 G-AGAAGAGTGATTCAGGAAG-TAGTGAAGAAGGAGATCTCCACAAAAAAATTGAAGGGA 1841
Query 2355 GAAATTTCAGAGGAAGACACTATACTTCTCGATGTTGACCAACCTAACAACAAATTGGTC 2414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 GAAATTTCAGAGGAAGACACTATACTTCTCGATGTTGACCAACCTAACAACAAATTGGTC 1901
Query 2415 ATCAAGAAGCTAGAGATTAATGCTCCTGTTGAAGAATTGGCCCCATAATCATACAAACTT 2474
||||||||| | ||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1902 ATCAAGAAGGTCGAGATCGATGCTCCTGTTGAAGAATTGGCCGCATGATCATACAAACTT 1961
Query 2475 -ATTAAGA 2481
|| ||||
Sbjct 1962 GAT-AAGA 1968
Score = 324 bits (175), Expect = 3e-87
Identities = 239/269 (89%), Gaps = 8/269 (3%)
Strand=Plus/Plus
Query 1013 AGCTATTGATCTTGTTGATGAAGCTGCTGCAAAGTTGAGGGTTTTAACCACTCCGAAACC 1072
|||||||||||||||||||||||||||||||||||||||||||| | || | |||||
Sbjct 173 AGCTATTGATCTTGTTGATGAAGCTGCTGCAAAGTTGAGGGTTT---CGAC-C--AAACC 226
Query 1073 AACTGAACTGGATGAAATAAACAAAGCTGTGCTCAAACTCGCGACAGAGAAGTTTTCTTT 1132
||||||||| |||||||||||||||| |||| ||||||| | || ||||||||||||||
Sbjct 227 AACTGAACTTGATGAAATAAACAAAGTTGTGATCAAACTGGAGATGGAGAAGTTTTCTTT 286
Query 1133 GCAAAGGGATACTGAAAAAGCTTCTATAGAAGTTCTACAGAAAATGAATAAAGATTTGAG 1192
||||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 287 GCAAAGGGATACTGATAAAGCTTCTAAAGAACTTCTACAGAAAATGGATAAAGATTTGAC 346
Query 1193 CAGGCTCGCGGATAAAC-GAAACAAACTCAGTAAGCAATTGGAGCAAGAAAAGTCTCTCA 1251
|| |||| |||||| | |||| || || |||| |||||||||| |||||||||||||||
Sbjct 347 CATGCTCAAGGATAAGCAGAAAGAA-CTTAGTATGCAATTGGAGGAAGAAAAGTCTCTCA 405
Query 1252 TTACTAAATTACGTTCATTTAAAGAAGAG 1280
||| |||||||||||||||||||||||||
Sbjct 406 TTAATAAATTACGTTCATTTAAAGAAGAG 434
Score = 158 bits (85), Expect = 3e-37
Identities = 91/94 (97%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 921 TTACATCATGGTGTTAAGATATCAGATGGTTCTCTAGTTTCAGCAGCGGTTTTGGCAGAC 980
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 7 TTACATCATGGTGTTAAGATATCAAATGGTTCTTTATTTTCAGCAGCGGTTTTGGCAGAC 66
Query 981 CGCTACATCACTGAACGCTTTCTTCCAGACAAAG 1014
||||||||||||||||||||||||||||||||||
Sbjct 67 CGCTACATCACTGAACGCTTTCTTCCAGACAAAG 100
> AT3G32383.1 | Symbols: | transposable element gene | chr3:13314146-13318012
FORWARD LENGTH=3867
Length=3867
Score = 366 bits (198), Expect = 5e-100
Identities = 269/303 (89%), Gaps = 5/303 (2%)
Strand=Plus/Plus
Query 1 TTGTTCCAATTCATCTTGACATGGCGTCTAGAAGATTATCGAAGTCTGTTTCCGCAGCCA 60
||||||||||||||||| ||||||||||||||| ||||||||| | |||||| |||||||
Sbjct 386 TTGTTCCAATTCATCTTCACATGGCGTCTAGAAAATTATCGAAATGTGTTTCTGCAGCCA 445
Query 61 TCAAGGCACACAATGCTCTTTCAAGACCTTCTATCCTCCTCCGGTCTCGCGCCCTCTCTG 120
|||||||||||||||||||||| ||||||||| | ||||| || |||||| |||| ||||
Sbjct 446 TCAAGGCACACAATGCTCTTTCGAGACCTTCTTTACTCCTTCGTTCTCGCCCCCTATCTG 505
Query 121 CCTGTGCTCACTTCAGCTCGCGTTCCTCATCCAA-TTCCTTTCTTTTCCGGCCAAACTCC 179
||||||||||||||||||| |||||||| ||| | ||| ||| ||||||||||| |||||
Sbjct 506 CCTGTGCTCACTTCAGCTCACGTTCCTC-TCCCAGTTCTTTTATTTTCCGGCCATACTCC 564
Query 180 TTCATCGGCGTTTCCGGAAACGGCATAACTTCTTCAGCCACTCAAGCCGCTTCTCGTGGC 239
|||||||| |||||||||||||| |||||||| |||||||| ||| |||||||||||
Sbjct 565 TTCATCGGAGTTTCCGGAAACGGTATAACTTC---AGCCACTCCAGCAGCTTCTCGTGGA 621
Query 240 CAACTTTTACCTCTTTCTCTCCAATTCTCTTCTCCACGCAGCTTCTCTGATAAATCAGAT 299
||||||||||| ||||||||||||||| |||||| ||| ||||||| |||||| |||||
Sbjct 622 CAACTTTTACCCCTTTCTCTCCAATTCCCTTCTCTGCGCCGCTTCTCGGATAAAGCAGAT 681
Query 300 CAG 302
|||
Sbjct 682 CAG 684
Score = 278 bits (150), Expect = 2e-73
Identities = 183/199 (92%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 301 AGACTGATGATAATG-ATAAAGCACTTGAAAAATATGGAAGTGATTTAACGGAGATGGCT 359
||||||||| ||| | || |||||||||||| ||||||||| |||||||| |||||||||
Sbjct 793 AGACTGATGCTAA-GCATGAAGCACTTGAAACATATGGAAGGGATTTAACCGAGATGGCT 851
Query 360 AAACAAGGAAAACTCCCACCTCTCATTGGACGTGATGATGAAGTTAACCGGTGTATCCAA 419
| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 852 AGACAAGGAAAACTCCCTCCTCTCATTGGACGTGATGATGAAGTTAACCGTTGCATCCAA 911
Query 420 ATACTATGCAGGATGACAAAAAGCAACCCTGTTATCATCGGTGAACCGGGTGTAGGGAAA 479
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 912 ATACTATGCAGGATGACAAAAAGCAATCCTGTTATCATTGGTGAACCGGGTGTTGGGAAA 971
Query 480 ACCGCTATTGCAGAAGGGT 498
|| ||||||| ||||||||
Sbjct 972 ACTGCTATTGTAGAAGGGT 990
Score = 278 bits (150), Expect = 2e-73
Identities = 205/231 (89%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 697 GTGCAGGAGCTTGTAAAGATGATACAATGGATGTGAGCAACCTCCTAAAACCAATGCTTG 756
||| |||||||||| | | ||||||||||||||||||||||||| | ||||||||| |||
Sbjct 3637 GTGTAGGAGCTTGTGAGGGTGATACAATGGATGTGAGCAACCTCTTGAAACCAATGATTG 3696
Query 757 GAAGAGGTGAACT-ACGATGCATTGGTGCAACTACGCTAACCG-AATACCGCAAATATAT 814
|||||| |||||| | ||||||||| ||||||||||| | || ||||| | ||||||||
Sbjct 3697 GAAGAGATGAACTGA-AATGCATTGGCGCAACTACGCTTA-CGAAATACGGTAAATATAT 3754
Query 815 GGAGAAAGATCCAGCTCTTGAACGTAGGTTTCAGAAAGTGT-TCTGTAATCAGCCATCTG 873
||||||||||| |||||| |||||||||||||||||| | | | ||||||||||||| ||
Sbjct 3755 GGAGAAAGATCTAGCTCTGGAACGTAGGTTTCAGAAA-TTTATTTGTAATCAGCCATTTG 3813
Query 874 TTGAAGATACCATCTCGATTCTTCGTGGGTTAAGAAAGCGGTATGAATTAC 924
|||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 3814 TTGAAGATACCATCTCGATTCTTCGTGGCTTAAGAAAGCGGTATGAGTTAC 3864
Score = 152 bits (82), Expect = 1e-35
Identities = 116/132 (88%), Gaps = 3/132 (2%)
Strand=Plus/Plus
Query 574 CAC-TGATTGCTGGTACCGAATATCGAGG-GCAATTTGAGGAAAGGTTGAAAGCAATGTT 631
||| || ||| |||||| |||||| |||| | | ||||||||||||||||||||||||||
Sbjct 3398 CACATGCTTGATGGTACAGAATATTGAGGAG-ATTTTGAGGAAAGGTTGAAAGCAATGTT 3456
Query 632 GAATGAAATAACTGCATCCAATGGCAAGACAATATTGTTCATTGATGAAATCCACACTAT 691
|| ||||||| | ||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 3457 AAAGGAAATAAATTCATCCAATGGCTAGATAATCTTGTTCATTGATGAAATCCACACTAT 3516
Query 692 TGTTGGTGCAGG 703
|||||| |||||
Sbjct 3517 TGTTGGGGCAGG 3528
> AT2G25030.1 | Symbols: | pseudogene, HSP100/ClpB, putative,
similar to HSP100/ClpB GI:9651530 (Phaseolus lunatus); blastp
match of 77% identity and 3.4e-113 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700
ClpB {Phaseolus lunatus} |
chr2:10648663-10650450 FORWARD LENGTH=1788
Length=1788
Score = 283 bits (153), Expect = 5e-75
Identities = 236/276 (86%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 2178 CAGATGAGACGAGTGAAGAATTTGTTGGAACAAAAGAAAATAAATCTTGAGTACACAAAA 2237
|||||||||| ||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 1262 CAGATGAGACAAGTGAAGAAGAGGTTGGAACAGAATAAAATAAATCTTGAGTACACAAAA 1321
Query 2238 GAAGCGGTGGATCTACTTGCTCAGCTTGGGTTTGATCCCAACAATGGGGCAAGGCCAGTG 2297
||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 1322 GAAGCTGTGGATCTCCTTGCTCAGCTTGGCTTTGACCCCAACAATGGGGCAAGACCGGTG 1381
Query 2298 AAG-AGAGTGATTCAGGAGATAGTGAAGAAGGAGATCTCC-TCAAAACTTTTGAAGGGAG 2355
||| | | ||||| || || | ||||||||||||||| || ||||| ||||||| ||||
Sbjct 1382 AAGCAAA-TGATTGAGAAGCTTGTGAAGAAGGAGATCACCCTCAAAG-TTTTGAAAGGAG 1439
Query 2356 AAATTT-CAGAGGAAGACACTATACTTCTCGATGTTGACCAACCTAACAACAAATTGGTC 2414
| ||| ||||||| | |||||| ||| |||||| |||||| |||||||||||| |||||
Sbjct 1440 AT-TTTGCAGAGGATGGCACTATTCTTATCGATGCTGACCAGCCTAACAACAAACTGGTC 1498
Query 2415 ATCAAGAAGCTAGAGATTAATGCTCCTGTTGAAGAA 2450
||||||||| | |||| |||||||| ||| |||||
Sbjct 1499 ATCAAGAAGATGGAGAATAATGCTCATGTCAAAGAA 1534
> AT2G25040.1 | Symbols: | pseudogene, similar to ClpB, blastp
match of 70% identity and 9.9e-20 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700
ClpB {Phaseolus lunatus} | chr2:10651599-10651901
FORWARD LENGTH=303
Length=303
Score = 274 bits (148), Expect = 3e-72
Identities = 181/197 (92%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 303 ACTGATGATAATG-ATAAAGCACTTGAAAAATATGGAAGTGATTTAACGGAGATGGCTAA 361
||||||| ||| | || |||||||||||| |||||||||||||||||| |||||||||
Sbjct 1 ACTGATGCTAA-GCATGAAGCACTTGAAACATATGGAAGTGATTTAACCAAGATGGCTAG 59
Query 362 ACAAGGAAAACTCCCACCTCTCATTGGACGTGATGATGAAGTTAACCGGTGTATCCAAAT 421
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 ACAAGGAAAACTCCCTCCTCTCATTGGACGTGATGATGAAGTTAACCGGTGCATCCAAAT 119
Query 422 ACTATGCAGGATGACAAAAAGCAACCCTGTTATCATCGGTGAACCGGGTGTAGGGAAAAC 481
|||||||||||||||| ||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 120 ACTATGCAGGATGACAGAAAGCAATCCTGTTATCATTGGTGAACCGGGTGTTGGAAAAAC 179
Query 482 CGCTATTGCAGAAGGGT 498
|||||||| ||||||||
Sbjct 180 CGCTATTGTAGAAGGGT 196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123210012008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5